CABS-dock: 67e309ce60c76d3

Project name: 67e309ce60c76d3

Status: done

submitted: 2026-07-23 05:47:28, status changed: 2026-07-23 10:20:45

Project settings

Protein sequence(s)	LYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKK input pdb
Peptide sequence	IGASWPDHATT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.3282	5.65839	28.6278	132
cluster_2.pdb ( medoid)	21.5198	7.52794	30.4341	162
cluster_3.pdb ( medoid)	18.8601	10.4454	31.1526	197
cluster_4.pdb ( medoid)	10.52	8.36504	28.1724	88
cluster_5.pdb ( medoid)	9.51775	10.7168	22.6672	102
cluster_6.pdb ( medoid)	7.93491	9.57793	20.8782	76
cluster_7.pdb ( medoid)	6.90875	9.26361	25.2422	64
cluster_8.pdb ( medoid)	4.34385	17.9564	37.7773	78
cluster_9.pdb ( medoid)	3.58888	12.5387	30.1486	45
cluster_10.pdb ( medoid)	3.23944	17.2869	34.1595	56