CABS-dock: 69ee39de9a2fb16

Project name: 69ee39de9a2fb16

Status: done

submitted: 2026-06-24 02:59:33, status changed: 2026-06-24 06:50:14

Project settings

Protein sequence(s)	CIKYLLFVFNFVFWLAGGVILGVALWLRHDPQTTNLLYLELGDKPAPNTFYVGIYILIAVGAVMMFVGFLGCYGAIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIAKDVKQFYDQALQQAVVDDDANNAKAVVKTFHETLDCCGSSTLTALTTSVLTSNLCPSGSNIISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVIMIFEMILSMVL input pdb
Peptide sequence	RGLVSQLQIQQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.3525	6.34865	28.0953	180
cluster_2.pdb ( medoid)	27.226	5.2156	33.0781	142
cluster_3.pdb ( medoid)	26.0478	3.91588	16.581	102
cluster_4.pdb ( medoid)	16.7293	5.79822	20.815	97
cluster_5.pdb ( medoid)	14.142	9.54601	24.3162	135
cluster_6.pdb ( medoid)	13.9533	9.10177	30.8917	127
cluster_7.pdb ( medoid)	10.3686	6.07601	19.9952	63
cluster_8.pdb ( medoid)	9.04091	8.18501	24.7129	74
cluster_9.pdb ( medoid)	6.63075	8.4455	17.0708	56
cluster_10.pdb ( medoid)	1.22386	19.6101	34.2721	24