CABS-dock: 7T5M_HRDSVD

Project name: 7T5M_HRDSVD_E2

Status: done

submitted: 2026-05-30 16:11:46, status changed: 2026-05-31 15:24:19

Project settings

Protein sequence(s)	GSSHSSMMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRRFDSDAASQRMEEPRAPWIEQEGPPEYWDGETRRKVKAHSQTHRVDLGTLLRGYYNQSEAGSHTVQRMYGCDVVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHHHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKKETLQRTTDAPKKTHMMTHHAVSDHEATLRCWALSFYPPAEITLTWQRDGEDDQTQDTELVETRPAGDGTFQKWAAVVVPSSSGQEQRYTCHVQHEGLPKPLTLRWEP input pdb
Peptide sequence	HRDSVDSAPILTAFNSSHKGRI
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCCCCCHHHCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.2974	4.58046	14.2332	180
cluster_2.pdb ( medoid)	25.0947	4.50294	10.3426	113
cluster_3.pdb ( medoid)	22.8001	5.26314	24.637	120
cluster_4.pdb ( medoid)	22.5519	5.09934	17.1629	115
cluster_5.pdb ( medoid)	21.6929	5.53177	15.5552	120
cluster_6.pdb ( medoid)	10.7129	10.6413	20.9885	114
cluster_7.pdb ( medoid)	7.87489	12.1907	25.643	96
cluster_8.pdb ( medoid)	7.2774	8.51953	17.735	62
cluster_9.pdb ( medoid)	6.81311	6.16459	20.5371	42
cluster_10.pdb ( medoid)	6.78229	5.60283	13.4307	38