CABS-dock: 1n0a

Project name: 1n0a

Status: done

submitted: 2025-12-12 14:01:59, status changed: 2025-12-12 17:25:39

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	CTWEPDGKLTC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.9114	3.68796	19.3027	114
cluster_2.pdb ( medoid)	22.33	7.07569	24.7417	158
cluster_3.pdb ( medoid)	22.0219	10.3533	27.4161	228
cluster_4.pdb ( medoid)	20.8644	6.80585	20.7095	142
cluster_5.pdb ( medoid)	9.82186	8.34873	20.8712	82
cluster_6.pdb ( medoid)	7.59267	7.50725	23.667	57
cluster_7.pdb ( medoid)	6.94127	11.2371	22.0888	78
cluster_8.pdb ( medoid)	6.69596	7.91522	16.8659	53
cluster_9.pdb ( medoid)	6.31433	7.60175	14.4671	48
cluster_10.pdb ( medoid)	4.28167	9.34215	24.9677	40