CABS-dock: 79f2ca4cb010cdd

Project name: 79f2ca4cb010cdd

Status: done

submitted: 2026-02-26 17:21:40, status changed: 2026-02-27 00:38:19

Project settings

Protein sequence(s)	MERNSSLWKNLIDEHPVCTTWKQEAEGAIYHLASILFVVGFMGGSGFFGLLYVFSLLGLGFLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLGISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEEGIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLYALNDRVYIGKRYHYDIRLPNFYQMSTPEIRRSPLTQHFQNSRRYCDK input pdb
Peptide sequence	EKWLALWLKE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.1727	4.23765	11.3469	166
cluster_2.pdb ( medoid)	29.2921	4.95015	13.5337	145
cluster_3.pdb ( medoid)	21.6075	6.89575	42.1554	149
cluster_4.pdb ( medoid)	18.4039	6.30302	32.3842	116
cluster_5.pdb ( medoid)	15.1429	7.5283	20.6417	114
cluster_6.pdb ( medoid)	8.61682	8.2397	21.8552	71
cluster_7.pdb ( medoid)	8.59918	10.5824	39.2559	91
cluster_8.pdb ( medoid)	6.53941	13.4569	27.4797	88
cluster_9.pdb ( medoid)	3.08764	8.42068	15.8983	26
cluster_10.pdb ( medoid)	2.87088	11.8431	27.3404	34