CABS-dock: CRVTARR02

Project name: CRVTARR02

Status: done

submitted: 2026-07-15 03:33:16, status changed: 2026-07-15 05:34:31

Project settings

Protein sequence(s)	AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA input pdb
Peptide sequence	CRVTARR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.2451	3.67499	23.4651	192
cluster_2.pdb ( medoid)	49.4921	2.3034	8.12865	114
cluster_3.pdb ( medoid)	40.1411	4.1105	13.6058	165
cluster_4.pdb ( medoid)	38.405	3.28083	11.0736	126
cluster_5.pdb ( medoid)	25.6877	4.32114	26.2564	111
cluster_6.pdb ( medoid)	12.7769	5.24385	10.584	67
cluster_7.pdb ( medoid)	12.5425	3.98646	7.74123	50
cluster_8.pdb ( medoid)	10.7652	5.75932	13.7931	62
cluster_9.pdb ( medoid)	7.48962	8.41164	20.2661	63
cluster_10.pdb ( medoid)	4.63544	10.7865	28.8709	50