CABS-dock: 82e9a968496163f

Project name: 82e9a968496163f

Status: done

submitted: 2026-01-20 05:55:28, status changed: 2026-01-20 09:09:20

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	RVIFVQVGSNCR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.707	5.01565	14.9345	149
cluster_2.pdb ( medoid)	20.4208	5.58254	28.9858	114
cluster_3.pdb ( medoid)	18.5796	5.97429	18.1721	111
cluster_4.pdb ( medoid)	16.6427	7.09018	23.9942	118
cluster_5.pdb ( medoid)	15.7568	10.9794	32.667	173
cluster_6.pdb ( medoid)	9.34693	8.87992	23.9989	83
cluster_7.pdb ( medoid)	6.48414	11.8751	35.2338	77
cluster_8.pdb ( medoid)	5.44057	17.2776	33.2196	94
cluster_9.pdb ( medoid)	5.15978	9.10892	25.3659	47
cluster_10.pdb ( medoid)	3.54918	9.57968	22.2618	34