CABS-dock: STEAP1_PEP8-Bicyclic

Project name: STEAP1_PEP8-Bicyclic

Status: done

submitted: 2026-07-21 16:12:20, status changed: 2026-07-21 16:43:23

Project settings

Protein sequence(s)	RRSYRYKLLNWAYQQVQQNKEDAWIEHDVWRME input pdb
Peptide sequence	CPEDWLCGGCEWYDC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.1901	9.06082	33.3625	192
cluster_2.pdb ( medoid)	19.3778	3.25115	22.7926	63
cluster_3.pdb ( medoid)	16.233	6.65312	21.258	108
cluster_4.pdb ( medoid)	14.9773	5.94232	23.2705	89
cluster_5.pdb ( medoid)	13.9649	7.94851	29.9652	111
cluster_6.pdb ( medoid)	13.6078	10.9496	26.6945	149
cluster_7.pdb ( medoid)	13.1549	4.02893	20.7477	53
cluster_8.pdb ( medoid)	8.70967	10.7926	26.7056	94
cluster_9.pdb ( medoid)	5.57733	12.7301	26.0805	71
cluster_10.pdb ( medoid)	4.86067	14.4013	26.6537	70