CABS-dock: 1234

Project name: 1234

Status: done

submitted: 2026-04-20 13:54:53, status changed: 2026-04-20 18:00:32

Project settings

Protein sequence(s)	NTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQCQSLHGSEADTLRKVLVEVLADNTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQCQSLHGSEADTLRKVLVEVLAD input pdb
Peptide sequence	GPSPPPMAGGCGR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.2113	3.64584	10.6907	194
cluster_2.pdb ( medoid)	42.8353	1.91431	4.57384	82
cluster_3.pdb ( medoid)	30.3885	4.14631	18.2799	126
cluster_4.pdb ( medoid)	23.8624	3.98116	16.4454	95
cluster_5.pdb ( medoid)	20.6796	5.12581	15.1248	106
cluster_6.pdb ( medoid)	14.3978	4.72293	10.531	68
cluster_7.pdb ( medoid)	11.0004	10.7269	38.0468	118
cluster_8.pdb ( medoid)	9.79343	12.6615	40.5468	124
cluster_9.pdb ( medoid)	4.05357	14.3084	46.3467	58
cluster_10.pdb ( medoid)	2.44931	11.8401	48.0123	29