CABS-dock: 96969fb7c31e228

Project name: 96969fb7c31e228

Status: done

submitted: 2026-07-01 10:06:25, status changed: 2026-07-01 12:16:02

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	KRLVQVFGSNTYRLH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCCCCEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.2711	5.10465	23.0384	129
cluster_2.pdb ( medoid)	19.4594	6.6292	31.4115	129
cluster_3.pdb ( medoid)	17.1822	8.32256	23.7116	143
cluster_4.pdb ( medoid)	10.8313	11.7253	28.2212	127
cluster_5.pdb ( medoid)	8.25987	12.8331	29.8415	106
cluster_6.pdb ( medoid)	6.89524	12.6174	26.0104	87
cluster_7.pdb ( medoid)	6.87982	13.6631	25.764	94
cluster_8.pdb ( medoid)	6.65686	8.11194	20.3361	54
cluster_9.pdb ( medoid)	5.34099	12.17	25.4794	65
cluster_10.pdb ( medoid)	4.78663	13.7884	23.3364	66