CABS-dock: 9de4f0c1bc29084

Project name: 9de4f0c1bc29084

Status: done

submitted: 2026-05-01 02:48:09, status changed: 2026-05-01 08:34:32

Project settings

Protein sequence(s)	NLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGL input pdb
Peptide sequence	AFDAFDR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.5712	4.67761	29.911	143
cluster_2.pdb ( medoid)	26.7868	8.58632	31.5896	230
cluster_3.pdb ( medoid)	23.1094	4.58687	26.0942	106
cluster_4.pdb ( medoid)	21.3762	6.26865	44.6539	134
cluster_5.pdb ( medoid)	15.7802	8.74515	26.9813	138
cluster_6.pdb ( medoid)	11.6988	4.61585	14.2117	54
cluster_7.pdb ( medoid)	11.6248	4.64526	12.3544	54
cluster_8.pdb ( medoid)	4.30971	13.226	36.0065	57
cluster_9.pdb ( medoid)	3.14572	15.8946	41.5169	50
cluster_10.pdb ( medoid)	2.96463	11.4686	37.8088	34