CABS-dock: RecA-Cs8

Project name: RecA-Cs8

Status: done

submitted: 2026-01-10 14:52:52, status changed: 2026-01-10 18:08:01

Project settings

Protein sequence(s)	EGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVVIRNGDWL input pdb
Peptide sequence	IVKVQANQHKHIAGLKE
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEECCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.7144	4.40205	21.0995	122
cluster_2.pdb ( medoid)	23.9001	4.97905	11.0292	119
cluster_3.pdb ( medoid)	20.5593	9.48477	38.1283	195
cluster_4.pdb ( medoid)	10.0456	8.1628	24.3772	82
cluster_5.pdb ( medoid)	8.09836	12.3482	26.4879	100
cluster_6.pdb ( medoid)	7.81764	7.41912	23.7338	58
cluster_7.pdb ( medoid)	7.21455	15.6628	40.976	113
cluster_8.pdb ( medoid)	6.48327	7.55792	25.372	49
cluster_9.pdb ( medoid)	6.17561	11.8207	27.6463	73
cluster_10.pdb ( medoid)	6.06556	14.673	36.8105	89