CABS-dock: braf_monomer_peptide_7

Project name: braf_monomer_peptide_7_new

Status: done

submitted: 2026-01-16 17:27:06, status changed: 2026-01-17 02:32:39

Project settings

Protein sequence(s)	DWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYKHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRRDLKSNNIFLHEDNNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAEECLKKKRDERPSFPRILAEIEELARE input pdb
Peptide sequence	KTRHVNILLFM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	56.9717	2.33449	6.11632	133
cluster_2.pdb ( medoid)	37.9846	2.81693	12.9199	107
cluster_3.pdb ( medoid)	28.2014	5.31888	11.0373	150
cluster_4.pdb ( medoid)	20.0812	5.27857	17.6948	106
cluster_5.pdb ( medoid)	15.3258	9.39589	26.5484	144
cluster_6.pdb ( medoid)	13.7841	7.39982	27.766	102
cluster_7.pdb ( medoid)	12.6783	8.9129	31.2316	113
cluster_8.pdb ( medoid)	6.65056	9.0218	31.4258	60
cluster_9.pdb ( medoid)	3.42347	12.8524	31.8663	44
cluster_10.pdb ( medoid)	2.7805	14.7456	34.3107	41