CABS-dock: SVHRSP

Project name: SVHRSP_TACR3

Status: done

submitted: 2026-04-14 09:16:14, status changed: 2026-04-14 16:20:53

Project settings

Protein sequence(s)	NQFVQPSWRIALWSLAYGVVVAVAVLGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKTKVMPGRTLCFVQWPEGPKQHFTYHIIVIILVYCFPLLIMGITYTIVGITLWGEQLKAKRKVVKMMIIVVMTFAICWLPYHIYFILTAIYQQLNRWKYIQQVYLASFWLAMSSTMYNPIIYCCLNKRFRAGFKR input pdb
Peptide sequence	KVLNGPEEEAAAPAE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHHCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.0886	1.80511	8.50076	85
cluster_2.pdb ( medoid)	37.7124	3.89792	15.5812	147
cluster_3.pdb ( medoid)	15.8932	6.73245	21.7581	107
cluster_4.pdb ( medoid)	15.096	8.34659	22.0664	126
cluster_5.pdb ( medoid)	14.9928	9.5379	29.5088	143
cluster_6.pdb ( medoid)	9.94813	7.5391	14.685	75
cluster_7.pdb ( medoid)	8.80979	8.85378	30.1121	78
cluster_8.pdb ( medoid)	6.71673	15.0371	48.9698	101
cluster_9.pdb ( medoid)	5.84684	13.8536	29.985	81
cluster_10.pdb ( medoid)	5.31253	10.7293	25.1897	57