CABS-dock: b8c4bc39e798a4f

Project name: b8c4bc39e798a4f

Status: done

submitted: 2026-04-02 12:36:19, status changed: 2026-04-02 14:53:37

Project settings

Protein sequence(s)	MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA input pdb
Peptide sequence	LKEFLKRWARLLRW
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	64.9028	1.58699	19.7858	103
cluster_2.pdb ( medoid)	29.9086	2.64138	17.0808	79
cluster_3.pdb ( medoid)	26.2093	5.60869	21.7856	147
cluster_4.pdb ( medoid)	24.885	5.54551	15.6397	138
cluster_5.pdb ( medoid)	21.311	4.83319	18.6465	103
cluster_6.pdb ( medoid)	15.4333	8.29374	32.2666	128
cluster_7.pdb ( medoid)	4.35281	12.6355	25.1571	55
cluster_8.pdb ( medoid)	4.29427	14.205	26.013	61
cluster_9.pdb ( medoid)	4.25107	11.5265	22.7753	49
cluster_10.pdb ( medoid)	3.10042	11.9339	22.8816	37