CABS-dock: b8d515412140a05

Project name: b8d515412140a05

Status: done

submitted: 2026-03-12 14:57:38, status changed: 2026-03-12 18:32:19

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	WRVQLFGSNDA
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.8893	3.59035	24.5421	75
cluster_2.pdb ( medoid)	17.2558	10.3733	38.3984	179
cluster_3.pdb ( medoid)	11.6377	10.3113	24.6009	120
cluster_4.pdb ( medoid)	11.0647	9.3089	27.5611	103
cluster_5.pdb ( medoid)	8.71966	12.7299	29.8255	111
cluster_6.pdb ( medoid)	7.88646	11.1584	28.3361	88
cluster_7.pdb ( medoid)	7.85896	12.9788	31.9859	102
cluster_8.pdb ( medoid)	7.25625	11.1628	27.0214	81
cluster_9.pdb ( medoid)	6.93412	10.095	34.1197	70
cluster_10.pdb ( medoid)	4.39299	16.1621	41.8514	71