CABS-dock: c19bbc171fdd2ab

Project name: c19bbc171fdd2ab

Status: done

submitted: 2026-02-19 23:42:32, status changed: 2026-02-20 04:00:54

Project settings

Protein sequence(s)	VLLLDVTPLSLGIETMMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQH input pdb
Peptide sequence	SHPRPIRV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.0596	2.81006	23.4138	121
cluster_2.pdb ( medoid)	32.422	2.74505	17.4675	89
cluster_3.pdb ( medoid)	22.1869	5.63396	26.9736	125
cluster_4.pdb ( medoid)	21.4711	3.67937	13.9685	79
cluster_5.pdb ( medoid)	16.8509	9.96979	31.2937	168
cluster_6.pdb ( medoid)	15.9219	4.14523	14.4356	66
cluster_7.pdb ( medoid)	14.8364	8.08822	30.485	120
cluster_8.pdb ( medoid)	10.8968	10.2782	20.874	112
cluster_9.pdb ( medoid)	8.21468	6.2084	15.0321	51
cluster_10.pdb ( medoid)	6.27279	10.9999	25.7174	69