CABS-dock: c53cc688e87cc2f

Project name: c53cc688e87cc2f

Status: done

submitted: 2026-01-22 13:26:00, status changed: 2026-01-22 20:37:45

Project settings

Protein sequence(s)	VYVELQELVMDEKNQELRWMEAARWVQLEENLGENGAWGRPHLSHLTFWSLLELRRVFTKGTVLLDLQETSLAGVANQLLDRFIFEDQIRPQDREELLRALLLKHSHAGELEALGGVKPAVLTRPSQPLLPQHSSLETQLFCEEKIPPDSEATLVLVGRADFLEQPVLGFVRLQEAAELEAVELPVPIRFLFVLLGPEAPHIDYTQLGRAAATLMSERVFRIDAYMAQSRGELLHSLEGFLDCSLVLPPTDAPSEQALLSLVPVQRELLRRRYQSS input pdb
Peptide sequence	AAREEVPGRRGYPGY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.2307	8.18687	31.96	182
cluster_2.pdb ( medoid)	20.302	6.99438	26.7488	142
cluster_3.pdb ( medoid)	19.9246	8.8333	25.8235	176
cluster_4.pdb ( medoid)	13.6594	5.56393	20.0913	76
cluster_5.pdb ( medoid)	9.76914	11.1576	38.7974	109
cluster_6.pdb ( medoid)	9.73351	9.55462	33.4206	93
cluster_7.pdb ( medoid)	5.72524	13.9732	34.8741	80
cluster_8.pdb ( medoid)	5.72402	6.63869	20.3632	38
cluster_9.pdb ( medoid)	5.06673	7.10517	20.9724	36
cluster_10.pdb ( medoid)	4.42231	15.3766	31.245	68