CABS-dock: c688fed41ddfad4

Project name: c688fed41ddfad4

Status: done

submitted: 2024-07-26 05:05:27, status changed: 2024-07-26 06:54:43

Project settings

Protein sequence(s)	ATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV input pdb
Peptide sequence	LQEEDAGEYGCMVDGAR
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.35	6.42397	22.6568	150
cluster_2.pdb ( medoid)	20.5406	5.54999	23.3098	114
cluster_3.pdb ( medoid)	17.8915	6.87479	20.4424	123
cluster_4.pdb ( medoid)	12.4092	8.94496	23.9534	111
cluster_5.pdb ( medoid)	11.3795	5.97566	11.5152	68
cluster_6.pdb ( medoid)	10.5756	8.9829	22.3098	95
cluster_7.pdb ( medoid)	9.24244	13.741	30.4064	127
cluster_8.pdb ( medoid)	8.32235	13.3376	28.1996	111
cluster_9.pdb ( medoid)	7.79884	6.9241	12.0298	54
cluster_10.pdb ( medoid)	6.88749	6.82397	15.1937	47