CABS-dock: cb2c62c7b2832d4

Project name: cb2c62c7b2832d4

Status: done

submitted: 2026-04-11 14:33:02, status changed: 2026-04-11 16:10:36

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	RRRVQPYGSNDARRH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.2123	3.11725	14.3628	116
cluster_2.pdb ( medoid)	23.7681	4.7122	20.4627	112
cluster_3.pdb ( medoid)	14.3724	7.37523	21.0275	106
cluster_4.pdb ( medoid)	13.2995	7.81984	26.3227	104
cluster_5.pdb ( medoid)	12.3359	11.43	29.8913	141
cluster_6.pdb ( medoid)	9.95344	13.7641	26.3479	137
cluster_7.pdb ( medoid)	9.56199	6.90233	15.0234	66
cluster_8.pdb ( medoid)	9.06395	8.27454	26.3733	75
cluster_9.pdb ( medoid)	7.50674	14.6535	32.3031	110
cluster_10.pdb ( medoid)	5.34723	6.17143	13.1106	33