CABS-dock: cccdc36d3a50434

Project name: cccdc36d3a50434

Status: done

submitted: 2025-11-12 10:39:45, status changed: 2025-11-12 14:43:02

Project settings

Protein sequence(s)	MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA input pdb
Peptide sequence	KVFTAAVISGVGKYT
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEHHCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.3702	3.88149	25.2126	114
cluster_2.pdb ( medoid)	25.3336	9.4341	32.4875	239
cluster_3.pdb ( medoid)	19.2637	6.43699	28.5034	124
cluster_4.pdb ( medoid)	13.2356	10.0486	26.9896	133
cluster_5.pdb ( medoid)	10.9334	10.4268	23.5449	114
cluster_6.pdb ( medoid)	10.4706	11.1741	28.3428	117
cluster_7.pdb ( medoid)	8.48216	7.54525	22.7065	64
cluster_8.pdb ( medoid)	3.67973	13.3162	25.636	49
cluster_9.pdb ( medoid)	1.74835	12.5833	19.8222	22
cluster_10.pdb ( medoid)	1.6104	14.9032	26.1047	24