CABS-dock: DRAMP00856M

Project name: DRAMP00856M

Status: done

submitted: 2024-07-25 15:24:43, status changed: 2024-07-26 00:18:14

Project settings

Protein sequence(s)

SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMVLPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ input pdb

Peptide sequence

GLPVCGETCVGGTCNTPGCTCSWPVCTRN

Simulation mc cycles

Peptide secondary structure psipred

CCCCCCCCEECCCCCCCCCCEECCEEECC

Contact information

163:A 1:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.6214	3.42898	29.494	105
cluster_2.pdb ( medoid)	18.3261	6.49347	26.4859	119
cluster_3.pdb ( medoid)	16.0587	11.3957	27.1928	183
cluster_4.pdb ( medoid)	15.8139	7.39857	24.055	117
cluster_5.pdb ( medoid)	12.8121	7.10269	25.9324	91
cluster_6.pdb ( medoid)	12.8081	6.79257	27.8855	87
cluster_7.pdb ( medoid)	10.7432	5.95726	27.4948	64
cluster_8.pdb ( medoid)	10.2661	3.70149	5.72272	38
cluster_9.pdb ( medoid)	7.14414	6.85877	19.996	49
cluster_10.pdb ( medoid)	3.60168	13.0495	28.544	47