Project name: C-H-287_3

Status: done

submitted: 2025-02-04 08:29:09, status changed: 2025-02-04 22:07:22

Project settings
Protein sequence(s) MNMNVLVLCFVLSVSAEGLHVDRQVTGCSDHDGEEVYNLDGEEMWFADFIKREGVEPQPPFIDHITYQDGTYQTAEANQQTCKSNLDVVRTAMKDFKIEDEPPSSPMIYTRDAVELGGENTLICHVTGFYPAPVHVYWTKNGVDVTEGTSLNVPYPNTDGSFRQTARLKFIAQQGDVYSCTVSHLALDQSLTKIWDVDVQQPSVGPAVFCGVGLSVGLLGVAAGTFFLIKGNECSMASFILSFSLFFITVCTANGFRYYVVNSCEFNSSKLNDIEFTESYYYNKLEYIRFSSSVGKFVGYTEHGIKNAERWNNGPEVISSRGEKERYCLNNVGVDVESALTNTQTLRQASLCGAPSWQTCMLVCSVFDFYPKRIKVSWQRDGQEVTSDVTSTDELADGDWYYQIHSHLEYMPKSGEKISCVVEHASLSKPLITDWDPSMPESERNKIAIGTSGLILGLTLSLAGFIYYKRKAQGRILVPTN input pdb
Peptide sequence NKDYFAVSDGIDVIY
Simulation mc cycles50
Peptide secondary structure psipred CCCCEECCCCCEEEC
Flexible regions
108:B - 18:B 100:A - 19:A
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.5308 5.30611 24.2648 162
cluster_2.pdb ( medoid) 24.0594 4.57202 11.4874 110
cluster_3.pdb ( medoid) 23.2876 6.52709 28.0731 152
cluster_4.pdb ( medoid) 20.0588 8.22582 27.1611 165
cluster_5.pdb ( medoid) 18.5646 5.76366 14.0743 107
cluster_6.pdb ( medoid) 9.88188 5.36335 18.3991 53
cluster_7.pdb ( medoid) 8.81512 15.2012 48.5092 134
cluster_8.pdb ( medoid) 4.97749 9.64342 43.6708 48
cluster_9.pdb ( medoid) 4.83255 8.48413 17.2806 41
cluster_10.pdb ( medoid) 4.41568 6.34104 20.37 28