CABS-dock: DRAMP01005

Project name: DRAMP01005

Status: done

submitted: 2024-07-25 15:38:03, status changed: 2024-07-25 22:57:02

Project settings

Protein sequence(s)

SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMVLPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ input pdb

Peptide sequence

VKSTGRADDDLAVKTKYLPP

Simulation mc cycles

Peptide secondary structure psipred

CCCCCCCCCCCCCCCCCCCC

Contact information

163:A 1:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.4287	2.82257	7.11123	100
cluster_2.pdb ( medoid)	34.6117	3.72707	11.5376	129
cluster_3.pdb ( medoid)	30.6984	6.05894	12.2625	186
cluster_4.pdb ( medoid)	28.9746	3.96899	13.2728	115
cluster_5.pdb ( medoid)	26.1813	4.01049	16.6437	105
cluster_6.pdb ( medoid)	16.0161	6.24372	17.9702	100
cluster_7.pdb ( medoid)	14.6307	7.38175	33.5711	108
cluster_8.pdb ( medoid)	12.3744	5.57604	10.3183	69
cluster_9.pdb ( medoid)	6.29534	8.73662	25.9759	55
cluster_10.pdb ( medoid)	3.25786	10.1293	21.4936	33