CABS-dock: db5834647b17293

Project name: db5834647b17293

Status: done

submitted: 2026-07-08 08:39:47, status changed: 2026-07-08 11:59:11

Project settings

Protein sequence(s)	FKVLQEPTCVSDYMSISTCEWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAAGISYRARVRAWAQAYNTTWSEWSPSTKWH input pdb
Peptide sequence	RFLKKLDRLLAG
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.1141	5.88386	18.1399	136
cluster_2.pdb ( medoid)	20.5471	6.86228	18.8594	141
cluster_3.pdb ( medoid)	16.0335	9.29302	28.7488	149
cluster_4.pdb ( medoid)	13.8921	8.49405	25.1552	118
cluster_5.pdb ( medoid)	13.8261	8.17292	28.8461	113
cluster_6.pdb ( medoid)	12.8216	4.75761	27.0938	61
cluster_7.pdb ( medoid)	12.7663	9.63477	26.6638	123
cluster_8.pdb ( medoid)	9.9641	7.52702	15.2875	75
cluster_9.pdb ( medoid)	9.29951	5.16156	33.3845	48
cluster_10.pdb ( medoid)	2.89733	12.4252	35.0192	36