CABS-dock: db73c92c5cf1b82

Project name: db73c92c5cf1b82

Status: done

submitted: 2026-03-12 20:05:53, status changed: 2026-03-13 04:32:42

Project settings

Protein sequence(s)	APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALA input pdb
Peptide sequence	LISDAELEAIFEAELDC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.3167	6.21873	18.2143	145
cluster_2.pdb ( medoid)	21.2347	7.86449	19.0985	167
cluster_3.pdb ( medoid)	20.3401	4.57224	26.3002	93
cluster_4.pdb ( medoid)	18.3892	6.57994	44.0586	121
cluster_5.pdb ( medoid)	18.0007	5.722	43.3275	103
cluster_6.pdb ( medoid)	10.0707	9.13544	19.1695	92
cluster_7.pdb ( medoid)	9.89908	6.66729	17.4223	66
cluster_8.pdb ( medoid)	9.82612	7.63271	25.3239	75
cluster_9.pdb ( medoid)	6.82236	10.1138	47.2172	69
cluster_10.pdb ( medoid)	5.84578	11.8034	30.395	69