CABS-dock: dc4939abf95e320

Project name: dc4939abf95e320

Status: done

submitted: 2026-07-10 13:52:17, status changed: 2026-07-10 20:26:43

Project settings

Protein sequence(s)	FQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLALPTKRVTWVAPLGVRGADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHVMNNQLNAAFVG input pdb
Peptide sequence	MNVKGGYKMQVYGGLKM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCEEEEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.5847	2.9827	9.84126	130
cluster_2.pdb ( medoid)	21.8162	5.363	16.8556	117
cluster_3.pdb ( medoid)	21.7827	4.68262	11.8502	102
cluster_4.pdb ( medoid)	18.9156	7.50703	25.6511	142
cluster_5.pdb ( medoid)	16.5423	12.2112	35.0016	202
cluster_6.pdb ( medoid)	14.4262	3.39661	10.5642	49
cluster_7.pdb ( medoid)	9.6079	8.7428	25.7044	84
cluster_8.pdb ( medoid)	8.60267	8.95071	17.8723	77
cluster_9.pdb ( medoid)	5.2969	10.761	20.1151	57
cluster_10.pdb ( medoid)	3.45412	11.5804	36.0718	40