CABS-dock: 1kfp

Project name: 1kfp

Status: done

submitted: 2025-12-12 13:36:13, status changed: 2025-12-12 15:11:52

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	QCRRLCYKQRCVTYCRGR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEECCCCCHHCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.3629	2.64208	16.0082	104
cluster_2.pdb ( medoid)	16.5027	8.36226	25.4984	138
cluster_3.pdb ( medoid)	12.1024	11.2374	37.5355	136
cluster_4.pdb ( medoid)	11.9735	8.76935	25.7549	105
cluster_5.pdb ( medoid)	9.60357	14.1614	28.4483	136
cluster_6.pdb ( medoid)	9.10057	9.34007	33.5366	85
cluster_7.pdb ( medoid)	7.16111	11.8697	25.0749	85
cluster_8.pdb ( medoid)	4.85632	12.355	26.9409	60
cluster_9.pdb ( medoid)	4.586	19.4069	32.3206	89
cluster_10.pdb ( medoid)	4.19473	14.7805	30.9058	62