CABS-dock: e00e560bd70a29d

Project name: e00e560bd70a29d

Status: done

submitted: 2026-01-11 16:17:27, status changed: 2026-01-11 19:29:34

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPANSWISIANSEAIQIGHGNIITRQTVMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	RVIVQVGSNCFR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.4941	2.56874	5.27332	122
cluster_2.pdb ( medoid)	44.5002	2.92134	12.3379	130
cluster_3.pdb ( medoid)	39.8631	3.01031	29.1812	120
cluster_4.pdb ( medoid)	36.2324	3.75355	35.7634	136
cluster_5.pdb ( medoid)	33.3478	4.46806	9.35355	149
cluster_6.pdb ( medoid)	17.7747	5.68223	18.4978	101
cluster_7.pdb ( medoid)	15.6105	4.48417	23.2198	70
cluster_8.pdb ( medoid)	5.45727	13.9264	42.0084	76
cluster_9.pdb ( medoid)	4.44442	11.2501	32.6399	50
cluster_10.pdb ( medoid)	3.2246	14.2654	37.9368	46