CABS-dock: MAD20.3

Project name: MAD20.3_USP7

Status: done

submitted: 2026-01-12 05:29:15, status changed: 2026-01-12 09:32:33

Project settings

Protein sequence(s)	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWGARAHSS input pdb
Peptide sequence	ASVASGGSGGSVASGGSGNSRRTNPSDNSS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.1871	7.29658	29.8504	140
cluster_2.pdb ( medoid)	18.1988	6.0993	38.8227	111
cluster_3.pdb ( medoid)	14.4456	9.48387	27.3096	137
cluster_4.pdb ( medoid)	9.7494	14.1547	36.3053	138
cluster_5.pdb ( medoid)	9.68605	12.9052	39.1033	125
cluster_6.pdb ( medoid)	8.95441	14.853	44.69	133
cluster_7.pdb ( medoid)	8.75453	11.7653	44.3374	103
cluster_8.pdb ( medoid)	2.73644	21.5609	54.4225	59
cluster_9.pdb ( medoid)	1.99057	15.5734	31.1105	31
cluster_10.pdb ( medoid)	1.01757	22.6029	43.6669	23