CABS-dock: e7d46d13087480c

Project name: e7d46d13087480c

Status: done

submitted: 2026-01-21 10:49:40, status changed: 2026-01-21 13:24:32

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	VVVVVVVVVVVV
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEEEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.1207	2.45216	14.5017	118
cluster_2.pdb ( medoid)	41.6273	2.57043	13.9692	107
cluster_3.pdb ( medoid)	40.6974	5.16003	15.6524	210
cluster_4.pdb ( medoid)	19.2773	4.20183	11.891	81
cluster_5.pdb ( medoid)	18.5539	4.68904	22.6469	87
cluster_6.pdb ( medoid)	10.4657	10.9883	25.9509	115
cluster_7.pdb ( medoid)	9.91148	10.392	25.6095	103
cluster_8.pdb ( medoid)	7.73175	12.0283	30.0529	93
cluster_9.pdb ( medoid)	6.30677	9.83071	19.6583	62
cluster_10.pdb ( medoid)	4.2742	5.61509	11.0302	24