CABS-dock: ed5117171f0075d

Project name: ed5117171f0075d

Status: done

submitted: 2026-04-01 14:48:08, status changed: 2026-04-01 15:34:56

Project settings

Protein sequence(s)	MQAKPQIPKDKSKVAGYIEIPDADIKEPVYPGPATPEQLNRGVSFAEENESLDDQNISIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVGNETRKYKMTSIRDVKPTDVGVLDEQKGKDKQLTLITCDDYNEKTGVWEKRKIFVATEVKLPA input pdb
Peptide sequence	IFLDSSPTTKAP
Simulation mc cycles	5
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.6393	3.6037	14.7053	96
cluster_2.pdb ( medoid)	22.5418	4.87982	24.7189	110
cluster_3.pdb ( medoid)	17.4758	8.46886	28.502	148
cluster_4.pdb ( medoid)	17.0233	6.81417	29.7305	116
cluster_5.pdb ( medoid)	13.7011	9.70724	39.7473	133
cluster_6.pdb ( medoid)	13.6824	9.93977	24.1625	136
cluster_7.pdb ( medoid)	13.3616	4.49049	10.0295	60
cluster_8.pdb ( medoid)	7.58308	3.8243	6.45406	29
cluster_9.pdb ( medoid)	7.04338	15.4755	37.0802	109
cluster_10.pdb ( medoid)	2.90114	14.1324	34.5488	41