CABS-dock: f341be9c2808196

Project name: f341be9c2808196

Status: done

submitted: 2026-07-13 11:37:56, status changed: 2026-07-13 14:31:22

Project settings

Protein sequence(s)	GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS input pdb
Peptide sequence	AAAAAAAAAA
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.9759	4.58421	10.7216	142
cluster_2.pdb ( medoid)	24.8331	5.19469	10.5388	129
cluster_3.pdb ( medoid)	22.8919	5.76623	13.6539	132
cluster_4.pdb ( medoid)	20.6924	4.05946	11.1595	84
cluster_5.pdb ( medoid)	20.4618	5.52249	20.138	113
cluster_6.pdb ( medoid)	20.2457	3.90207	10.3267	79
cluster_7.pdb ( medoid)	18.843	3.82105	8.31466	72
cluster_8.pdb ( medoid)	18.4299	3.25558	9.09395	60
cluster_9.pdb ( medoid)	17.3381	7.15186	18.4693	124
cluster_10.pdb ( medoid)	15.2962	4.24943	10.2089	65