CABS-dock: 2LAS

Project name: 2LAS

Status: done

submitted: 2026-03-19 19:49:38, status changed: 2026-03-19 21:33:21

Project settings

Protein sequence(s)	EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG input pdb
Peptide sequence	DNEIEVIIVWEKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.5608	2.13087	13.4652	112
cluster_2.pdb ( medoid)	28.0253	4.28185	12.8163	120
cluster_3.pdb ( medoid)	26.684	3.37281	7.91487	90
cluster_4.pdb ( medoid)	24.4428	4.58213	11.7717	112
cluster_5.pdb ( medoid)	18.1833	5.00459	14.7944	91
cluster_6.pdb ( medoid)	16.4767	7.52579	22.3925	124
cluster_7.pdb ( medoid)	11.9923	10.2566	26.2905	123
cluster_8.pdb ( medoid)	11.0062	5.90578	13.9021	65
cluster_9.pdb ( medoid)	8.58254	11.4185	29.1041	98
cluster_10.pdb ( medoid)	6.51313	9.97984	25.3466	65