CABS-dock: f764acf4c2d8bfe

Project name: f764acf4c2d8bfe

Status: done

submitted: 2026-07-08 11:09:09, status changed: 2026-07-08 14:55:44

Project settings

Protein sequence(s)	GSHMMLEADLELERAADVRRWEEQAEISSGSSSPPILSSISIKNEEEEQTLGLLEDGAYRIKQKGILGYSQIGAGVYYKEGTFHTMWHVTRRRGAVLMHKGKRIEPSWADVKKDLISYGGGGWKLEGEWKEGEEVQVLLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVVVTRSGAYYVSAIAN input pdb
Peptide sequence	MGGHETQSHFGYDRR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.2716	6.17294	31.4322	156
cluster_2.pdb ( medoid)	22.2626	4.98594	41.0871	111
cluster_3.pdb ( medoid)	19.1336	6.68979	35.6356	128
cluster_4.pdb ( medoid)	16.2677	10.2043	29.6311	166
cluster_5.pdb ( medoid)	11.3746	9.67069	29.165	110
cluster_6.pdb ( medoid)	8.99477	9.00523	21.4517	81
cluster_7.pdb ( medoid)	7.8302	8.4289	21.2271	66
cluster_8.pdb ( medoid)	5.36948	17.5063	44.5662	94
cluster_9.pdb ( medoid)	4.98834	8.21916	16.8627	41
cluster_10.pdb ( medoid)	2.55395	18.4029	39.0801	47