CABS-dock: fda7616c6dde494

Project name: fda7616c6dde494

Status: done

submitted: 2025-12-30 18:43:24, status changed: 2025-12-30 22:08:10

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPARVIVQCGSNSFRMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	NPVTGRPLVNIYNCSGVQVGDNNYLTMQQT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEEEEECCCCCEECCCCEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.1882	2.58752	23.1516	60
cluster_2.pdb ( medoid)	19.4787	6.10923	24.4216	119
cluster_3.pdb ( medoid)	15.9839	11.5116	29.4666	184
cluster_4.pdb ( medoid)	12.4004	10.7255	30.4024	133
cluster_5.pdb ( medoid)	7.1337	14.1582	40.243	101
cluster_6.pdb ( medoid)	6.94575	16.8448	42.3837	117
cluster_7.pdb ( medoid)	6.76504	12.269	24.3702	83
cluster_8.pdb ( medoid)	6.06552	11.046	29.374	67
cluster_9.pdb ( medoid)	5.79478	14.1507	28.3634	82
cluster_10.pdb ( medoid)	4.71935	11.4422	33.5028	54