| Chain sequence(s) |
A: EVQLVESGGALVKPGGSLRLSCAASGFTFTEAWMHWVRQAPGKQLEWVAQIKDRSQTYATYYAESVKGRFTISRDDSKNTLYLQMNSLKTEDTATYYCRGVYYANAPFDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQSLVHNTGNTYLSWYLQKPGQSPQSLIYKVSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCGQGTQAPFTFGSGTKVEIK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | TS95A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.83805 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimization (00:00:00)
[INFO] FoldX: Building mutant model (00:01:02)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:05)
[INFO] Main: Simulation completed successfully. (00:01:06)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | E | A | -2.1777 | |
| 2 | V | A | -1.3696 | |
| 3 | Q | A | -1.4152 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.8798 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.1609 | |
| 8 | G | A | -0.6415 | |
| 9 | G | A | 0.2531 | |
| 10 | A | A | 0.8609 | |
| 11 | L | A | 1.4107 | |
| 12 | V | A | -0.2192 | |
| 13 | K | A | -1.8326 | |
| 14 | P | A | -1.7122 | |
| 15 | G | A | -1.4293 | |
| 16 | G | A | -1.0433 | |
| 17 | S | A | -1.2605 | |
| 18 | L | A | -0.7688 | |
| 19 | R | A | -1.8407 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3614 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1955 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.1170 | |
| 26 | G | A | -1.2956 | |
| 27 | F | A | -0.6716 | |
| 28 | T | A | -0.5728 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -1.3823 | |
| 31 | E | A | -1.7847 | |
| 32 | A | A | 0.0000 | |
| 33 | W | A | -0.1877 | |
| 34 | M | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.9137 | |
| 40 | A | A | -1.2772 | |
| 41 | P | A | -1.1762 | |
| 42 | G | A | -1.5418 | |
| 43 | K | A | -2.4350 | |
| 44 | Q | A | -1.7367 | |
| 45 | L | A | 0.0000 | |
| 46 | E | A | -1.0947 | |
| 47 | W | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | Q | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | K | A | -0.7455 | |
| 53 | D | A | 0.0000 | |
| 54 | R | A | -2.3624 | |
| 55 | S | A | -1.6398 | |
| 56 | Q | A | -1.4782 | |
| 57 | T | A | -0.9952 | |
| 58 | Y | A | -0.5256 | |
| 59 | A | A | -0.2471 | |
| 60 | T | A | 0.2145 | |
| 61 | Y | A | 0.1618 | |
| 62 | Y | A | -0.5924 | |
| 63 | A | A | -1.2859 | |
| 64 | E | A | -2.6603 | |
| 65 | S | A | -1.9765 | |
| 66 | V | A | 0.0000 | |
| 67 | K | A | -2.4934 | |
| 68 | G | A | -1.7183 | |
| 69 | R | A | -1.5025 | |
| 70 | F | A | 0.0000 | |
| 71 | T | A | -0.7561 | |
| 72 | I | A | 0.0000 | |
| 73 | S | A | -0.3193 | |
| 74 | R | A | -0.8547 | |
| 75 | D | A | -1.4837 | |
| 76 | D | A | -1.8047 | |
| 77 | S | A | -1.4908 | |
| 78 | K | A | -2.3358 | |
| 79 | N | A | -1.6851 | |
| 80 | T | A | -0.9829 | |
| 81 | L | A | 0.0000 | |
| 82 | Y | A | -0.5459 | |
| 83 | L | A | 0.0000 | |
| 84 | Q | A | -1.2226 | |
| 85 | M | A | 0.0000 | |
| 86 | N | A | -1.3579 | |
| 87 | S | A | -1.2073 | |
| 88 | L | A | 0.0000 | |
| 89 | K | A | -2.1085 | |
| 90 | T | A | -1.9480 | |
| 91 | E | A | -2.5119 | |
| 92 | D | A | 0.0000 | |
| 93 | T | A | -0.3950 | |
| 94 | A | A | 0.0000 | |
| 95 | S | A | 0.3344 | mutated: TS95A |
| 96 | Y | A | 0.0000 | |
| 97 | Y | A | 0.0000 | |
| 98 | C | A | 0.0000 | |
| 99 | R | A | 0.0000 | |
| 100 | G | A | 0.0000 | |
| 101 | V | A | 0.0000 | |
| 102 | Y | A | 0.0849 | |
| 103 | Y | A | 0.1014 | |
| 104 | A | A | -0.4781 | |
| 105 | N | A | -1.1088 | |
| 106 | A | A | -0.3817 | |
| 107 | P | A | -0.1158 | |
| 108 | F | A | 0.3741 | |
| 109 | D | A | 0.0000 | |
| 110 | Y | A | 0.0756 | |
| 111 | W | A | 0.0000 | |
| 112 | G | A | 0.0000 | |
| 113 | Q | A | -1.3497 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.4974 | |
| 116 | L | A | 1.5977 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | 0.3738 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -1.1832 | |
| 121 | S | A | -1.2544 | |
| 122 | G | A | -1.1006 | |
| 123 | G | A | -1.1340 | |
| 124 | G | A | -1.1692 | |
| 125 | G | A | -1.1856 | |
| 126 | S | A | -0.9873 | |
| 127 | G | A | -1.4089 | |
| 128 | G | A | -1.4952 | |
| 129 | G | A | -1.5099 | |
| 130 | G | A | -1.3978 | |
| 131 | S | A | -1.2154 | |
| 132 | G | A | -1.1683 | |
| 133 | G | A | -1.6836 | |
| 134 | G | A | -1.4912 | |
| 135 | G | A | -1.6233 | |
| 136 | S | A | -1.0542 | |
| 137 | D | A | -1.4000 | |
| 138 | I | A | 0.0000 | |
| 139 | V | A | 0.8358 | |
| 140 | M | A | 0.0000 | |
| 141 | T | A | -0.3541 | |
| 142 | Q | A | 0.0000 | |
| 143 | S | A | -0.1258 | |
| 144 | P | A | 0.3757 | |
| 145 | L | A | 1.2201 | |
| 146 | S | A | 0.1345 | |
| 147 | L | A | -0.2149 | |
| 148 | P | A | -0.9691 | |
| 149 | V | A | 0.0000 | |
| 150 | T | A | -1.4787 | |
| 151 | P | A | -1.7124 | |
| 152 | G | A | -1.9712 | |
| 153 | E | A | -2.4296 | |
| 154 | P | A | -2.1770 | |
| 155 | A | A | 0.0000 | |
| 156 | S | A | -0.7201 | |
| 157 | I | A | 0.0000 | |
| 158 | S | A | -0.8523 | |
| 159 | C | A | 0.0000 | |
| 160 | R | A | -2.3251 | |
| 161 | S | A | 0.0000 | |
| 162 | S | A | -0.9399 | |
| 163 | Q | A | -1.4235 | |
| 164 | S | A | -0.7803 | |
| 165 | L | A | 0.0000 | |
| 166 | V | A | 0.6459 | |
| 167 | H | A | -0.4974 | |
| 168 | N | A | -1.2519 | |
| 169 | T | A | -0.8114 | |
| 170 | G | A | -0.6701 | |
| 171 | N | A | -0.4730 | |
| 172 | T | A | -0.0305 | |
| 173 | Y | A | 0.0580 | |
| 174 | L | A | 0.0000 | |
| 175 | S | A | 0.0000 | |
| 176 | W | A | 0.0000 | |
| 177 | Y | A | 0.0000 | |
| 178 | L | A | 0.0000 | |
| 179 | Q | A | 0.0000 | |
| 180 | K | A | -1.6847 | |
| 181 | P | A | -1.1115 | |
| 182 | G | A | -1.5208 | |
| 183 | Q | A | -2.1646 | |
| 184 | S | A | -1.5003 | |
| 185 | P | A | 0.0000 | |
| 186 | Q | A | -0.9635 | |
| 187 | S | A | 0.0000 | |
| 188 | L | A | 0.0000 | |
| 189 | I | A | 0.0000 | |
| 190 | Y | A | -0.4631 | |
| 191 | K | A | -0.7584 | |
| 192 | V | A | -0.6101 | |
| 193 | S | A | -0.9554 | |
| 194 | N | A | -1.4362 | |
| 195 | R | A | -1.9200 | |
| 196 | A | A | -0.8856 | |
| 197 | S | A | -0.7174 | |
| 198 | G | A | -0.8912 | |
| 199 | V | A | -0.9814 | |
| 200 | P | A | -1.2790 | |
| 201 | D | A | -2.3937 | |
| 202 | R | A | -2.0717 | |
| 203 | F | A | 0.0000 | |
| 204 | S | A | -1.3027 | |
| 205 | G | A | 0.0000 | |
| 206 | S | A | -0.7711 | |
| 207 | G | A | -1.0294 | |
| 208 | S | A | -0.6730 | |
| 209 | G | A | -0.7133 | |
| 210 | T | A | -1.4958 | |
| 211 | D | A | -2.1492 | |
| 212 | F | A | 0.0000 | |
| 213 | T | A | -0.9845 | |
| 214 | L | A | 0.0000 | |
| 215 | K | A | -1.5234 | |
| 216 | I | A | 0.0000 | |
| 217 | S | A | -2.2917 | |
| 218 | R | A | -3.3092 | |
| 219 | V | A | 0.0000 | |
| 220 | E | A | -2.5802 | |
| 221 | A | A | -1.4276 | |
| 222 | E | A | -2.2240 | |
| 223 | D | A | 0.0000 | |
| 224 | V | A | -0.8548 | |
| 225 | G | A | 0.0000 | |
| 226 | V | A | -0.0920 | |
| 227 | Y | A | 0.0000 | |
| 228 | Y | A | 0.0000 | |
| 229 | C | A | 0.0000 | |
| 230 | G | A | 0.0000 | |
| 231 | Q | A | 0.0000 | |
| 232 | G | A | -0.4139 | |
| 233 | T | A | 0.0000 | |
| 234 | Q | A | -1.1274 | |
| 235 | A | A | -0.5999 | |
| 236 | P | A | -0.8623 | |
| 237 | F | A | 0.0000 | |
| 238 | T | A | -0.1352 | |
| 239 | F | A | 0.0000 | |
| 240 | G | A | 0.0000 | |
| 241 | S | A | -0.3527 | |
| 242 | G | A | 0.0000 | |
| 243 | T | A | 0.0000 | |
| 244 | K | A | -0.4738 | |
| 245 | V | A | 0.0000 | |
| 246 | E | A | -1.2190 | |
| 247 | I | A | -0.7696 | |
| 248 | K | A | -1.6914 |