| Chain sequence(s) |
A: MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage |
A: MEKTLETVPLERKKR EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY (Red indicates removed residues) |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] PDB: Running AlphaCutter (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:36)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:04:34)
[INFO] Main: Simulation completed successfully. (00:04:35)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 16 | E | A | -3.0242 | |
| 17 | K | A | -3.4117 | |
| 18 | E | A | -3.2907 | |
| 19 | Q | A | -2.0244 | |
| 20 | F | A | -1.3339 | |
| 21 | R | A | -1.5985 | |
| 22 | K | A | -1.0617 | |
| 23 | L | A | 0.0000 | |
| 24 | F | A | 0.4840 | |
| 25 | I | A | 0.0000 | |
| 26 | G | A | 0.0000 | |
| 27 | G | A | -0.4524 | |
| 28 | L | A | 0.0000 | |
| 29 | S | A | 0.0000 | |
| 30 | F | A | -0.0236 | |
| 31 | E | A | -1.4946 | |
| 32 | T | A | 0.0000 | |
| 33 | T | A | -1.4597 | |
| 34 | E | A | -1.6978 | |
| 35 | E | A | -2.6140 | |
| 36 | S | A | -2.2012 | |
| 37 | L | A | 0.0000 | |
| 38 | R | A | -2.7686 | |
| 39 | N | A | -2.5825 | |
| 40 | Y | A | -1.6180 | |
| 41 | Y | A | 0.0000 | |
| 42 | E | A | -2.3711 | |
| 43 | Q | A | -2.0531 | |
| 44 | W | A | -1.0794 | |
| 45 | G | A | -1.5178 | |
| 46 | K | A | -2.5184 | |
| 47 | L | A | 0.0000 | |
| 48 | T | A | -1.7303 | |
| 49 | D | A | -2.0514 | |
| 50 | C | A | -1.0366 | |
| 51 | V | A | 0.1146 | |
| 52 | V | A | 0.0000 | |
| 53 | M | A | -0.7420 | |
| 54 | R | A | -2.1369 | |
| 55 | D | A | -2.5975 | |
| 56 | P | A | -1.6701 | |
| 57 | A | A | -1.2381 | |
| 58 | S | A | -1.9749 | |
| 59 | K | A | -3.3207 | |
| 60 | R | A | -3.3234 | |
| 61 | S | A | 0.0000 | |
| 62 | R | A | -1.8650 | |
| 63 | G | A | -0.5708 | |
| 64 | F | A | 0.3225 | |
| 65 | G | A | 0.0000 | |
| 66 | F | A | 0.5389 | |
| 67 | V | A | 0.0000 | |
| 68 | T | A | 0.0000 | |
| 69 | F | A | 0.0000 | |
| 70 | S | A | -1.4943 | |
| 71 | S | A | -1.2664 | |
| 72 | M | A | -0.8913 | |
| 73 | A | A | -0.1613 | |
| 74 | E | A | -0.8984 | |
| 75 | V | A | 0.0000 | |
| 76 | D | A | -0.5740 | |
| 77 | A | A | -0.4031 | |
| 78 | A | A | 0.0000 | |
| 79 | M | A | 0.0000 | |
| 80 | A | A | -0.2940 | |
| 81 | A | A | -0.2815 | |
| 82 | R | A | -0.6955 | |
| 83 | P | A | -0.5271 | |
| 84 | H | A | 0.0000 | |
| 85 | S | A | -0.8073 | |
| 86 | I | A | 0.0000 | |
| 87 | D | A | -2.0972 | |
| 88 | G | A | -1.8463 | |
| 89 | R | A | -1.6022 | |
| 90 | V | A | 0.0072 | |
| 91 | V | A | 0.0000 | |
| 92 | E | A | -1.7129 | |
| 93 | P | A | 0.0000 | |
| 94 | K | A | -0.7233 | |
| 95 | R | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | V | A | -0.8360 | |
| 98 | A | A | -1.8368 | |
| 99 | R | A | -3.2231 | |
| 100 | E | A | -3.4441 | |
| 101 | E | A | -3.0359 | |
| 102 | S | A | -2.5529 | |
| 103 | G | A | -2.5362 | |
| 104 | K | A | -2.9750 | |
| 105 | P | A | -1.7583 | |
| 106 | G | A | -1.1518 | |
| 107 | A | A | 0.0000 | |
| 108 | H | A | -1.1851 | |
| 109 | V | A | -0.1437 | |
| 110 | T | A | -0.4684 | |
| 111 | V | A | -0.8248 | |
| 112 | K | A | -2.2623 | |
| 113 | K | A | -1.7302 | |
| 114 | L | A | 0.0000 | |
| 115 | F | A | -0.2681 | |
| 116 | V | A | 0.0000 | |
| 117 | G | A | 0.0000 | |
| 118 | G | A | -1.7090 | |
| 119 | I | A | 0.0000 | |
| 120 | K | A | -4.0823 | |
| 121 | E | A | -4.5286 | |
| 122 | D | A | -3.7388 | |
| 123 | T | A | 0.0000 | |
| 124 | E | A | -3.7734 | |
| 125 | E | A | -3.4164 | |
| 126 | H | A | -3.1761 | |
| 127 | H | A | -2.9407 | |
| 128 | L | A | 0.0000 | |
| 129 | R | A | -3.9776 | |
| 130 | D | A | -3.7313 | |
| 131 | Y | A | -2.2460 | |
| 132 | F | A | 0.0000 | |
| 133 | E | A | -4.0969 | |
| 134 | E | A | -3.3108 | |
| 135 | Y | A | -1.6455 | |
| 136 | G | A | -2.4313 | |
| 137 | K | A | -3.3505 | |
| 138 | I | A | -2.8969 | |
| 139 | D | A | -2.8473 | |
| 140 | T | A | -1.7236 | |
| 141 | I | A | -1.5026 | |
| 142 | E | A | -1.1795 | |
| 143 | I | A | -1.0779 | |
| 144 | I | A | -0.8504 | |
| 145 | T | A | -2.3829 | |
| 146 | D | A | -2.8015 | |
| 147 | R | A | -3.2037 | |
| 148 | Q | A | -2.6370 | |
| 149 | S | A | -2.3396 | |
| 150 | G | A | -2.6214 | |
| 151 | K | A | -3.5163 | |
| 152 | K | A | -3.5656 | |
| 153 | R | A | -3.2469 | |
| 154 | G | A | -2.5004 | |
| 155 | F | A | -0.8610 | |
| 156 | G | A | 0.0000 | |
| 157 | F | A | -0.2236 | |
| 158 | V | A | 0.0000 | |
| 159 | T | A | -1.8300 | |
| 160 | F | A | 0.0000 | |
| 161 | D | A | -2.6815 | |
| 162 | D | A | -2.0243 | |
| 163 | H | A | -1.2936 | |
| 164 | D | A | -0.8616 | |
| 165 | P | A | 0.0000 | |
| 166 | V | A | 0.0000 | |
| 167 | D | A | 0.0000 | |
| 168 | K | A | -0.3432 | |
| 169 | I | A | 0.0000 | |
| 170 | V | A | -0.7515 | |
| 171 | L | A | -0.5557 | |
| 172 | Q | A | -1.4154 | |
| 173 | K | A | -1.9190 | |
| 174 | Y | A | -0.8963 | |
| 175 | H | A | 0.0000 | |
| 176 | T | A | -0.8388 | |
| 177 | I | A | 0.0000 | |
| 178 | N | A | -1.9438 | |
| 179 | G | A | -1.3797 | |
| 180 | H | A | -1.8538 | |
| 181 | N | A | -1.9889 | |
| 182 | A | A | 0.0000 | |
| 183 | E | A | -1.5586 | |
| 184 | V | A | 0.0000 | |
| 185 | R | A | -1.2495 | |
| 186 | K | A | 0.0000 | |
| 187 | A | A | 0.0000 | |
| 188 | L | A | -1.0349 | |
| 189 | S | A | -1.9959 | |
| 190 | R | A | -3.2077 | |
| 191 | Q | A | -3.4807 | |
| 192 | E | A | -3.1996 | |
| 193 | M | A | -2.8278 | |
| 194 | Q | A | -3.8459 | |
| 195 | E | A | -3.9850 | |
| 196 | V | A | 0.0000 | |
| 197 | Q | A | -3.2783 | |
| 198 | S | A | -2.8473 | |
| 199 | S | A | -2.8834 | |
| 200 | R | A | -3.6586 | |
| 201 | S | A | -2.4176 | |
| 202 | G | A | -2.4332 | |
| 203 | R | A | -2.9793 | |
| 204 | G | A | -1.9362 |