Project name: 1e5a39a4f44c96c

Status: done

Started: 2026-05-17 19:14:55
Chain sequence(s) A: MTKQSADSNAKSGVTAEICHWASNLATDDIPSDVLERAKYLILDGIACAWVGARVPWSEKYVQATMSFEPPGACRVIGYGQKLGPVAAAMTNSAFIQATELDDYHSEAPLHSASIVLPAVFAASEVLAEQGKTISGIDVILAAIVGFESGPRIGKAIYGSDLLNNGWHCGAVYGAPAGALATGKLLGLTPDSMEDALGIACTQACGLMSAQYGGMVKRVQHGFAARNGLLGGLLAYGGYEAMKGVLERSYGGFLKMFTKGNGREPPYKEEEVVAGLGSFWHTFTIRIKLYACCGLVHGPVEAIEKLQRRYPELLNRANLSNIRHVYVQLSTASNSHCGWIPEERPISSIAGQMSVAYILAVQLVDQQCLLAQFSEFDDNLERPEVWDLARKVTPSHSEEFDQDGNCLSAGRVRIEFNDGSSVTETVEKPLGVKEPMPNERILHKYRTLAGSVTDESRVKEIEDLVLSLDRLTDITPLLELLNCPVKSPLV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:08:42)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/1e5a39a4f44c96c/tmp/folded.pdb                (00:08:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:15:30)
Show buried residues

Minimal score value
-3.762
Maximal score value
1.6346
Average score
-0.666
Total score value
-326.3638

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.3715
2 T A -0.7574
3 K A -2.0740
4 Q A -2.1362
5 S A -1.8063
6 A A -1.7328
7 D A -2.6334
8 S A -2.0011
9 N A -2.6485
10 A A -2.0967
11 K A -2.6986
12 S A -1.9077
13 G A -1.8040
14 V A -1.5248
15 T A 0.0000
16 A A 0.0000
17 E A -2.2106
18 I A 0.0000
19 C A 0.0000
20 H A -1.7890
21 W A -1.0953
22 A A 0.0000
23 S A -1.3367
24 N A -1.7257
25 L A 0.0000
26 A A -1.4915
27 T A -1.5222
28 D A -2.7034
29 D A -2.9510
30 I A 0.0000
31 P A -1.6752
32 S A -1.7976
33 D A -2.1477
34 V A 0.0000
35 L A -0.9788
36 E A -1.8604
37 R A 0.0000
38 A A 0.0000
39 K A 0.0000
40 Y A -0.5207
41 L A 0.0000
42 I A 0.0000
43 L A 0.0000
44 D A 0.0000
45 G A 0.0000
46 I A 0.0000
47 A A 0.0000
48 C A 0.0000
49 A A 0.0000
50 W A 0.0000
51 V A 0.0000
52 G A 0.0000
53 A A 0.0000
54 R A -0.9415
55 V A 0.0000
56 P A -0.7125
57 W A 0.0000
58 S A 0.0000
59 E A -1.8170
60 K A -2.3241
61 Y A -1.0230
62 V A 0.0000
63 Q A -1.5865
64 A A -0.7057
65 T A 0.0000
66 M A -0.1233
67 S A 0.3463
68 F A 1.3867
69 E A 0.1377
70 P A -0.4090
71 P A -0.8492
72 G A -0.9679
73 A A -0.9566
74 C A 0.0000
75 R A -1.3170
76 V A 0.0000
77 I A 0.0000
78 G A 0.0000
79 Y A -0.8422
80 G A -1.0673
81 Q A -1.6111
82 K A -1.8743
83 L A 0.0000
84 G A -0.5563
85 P A -0.0207
86 V A 0.3672
87 A A 0.0000
88 A A 0.0000
89 A A 0.0000
90 M A 0.2448
91 T A 0.0000
92 N A 0.0000
93 S A 0.0000
94 A A 0.0000
95 F A 0.0000
96 I A 0.0000
97 Q A 0.0000
98 A A 0.0000
99 T A 0.0000
100 E A 0.0000
101 L A 0.0000
102 D A 0.0000
103 D A 0.0000
104 Y A 0.0000
105 H A 0.0000
106 S A -0.7876
107 E A -1.8444
108 A A 0.0000
109 P A 0.0000
110 L A 0.0000
111 H A -0.1006
112 S A 0.0000
113 A A 0.0000
114 S A 0.0000
115 I A 0.0000
116 V A 0.0000
117 L A 0.0000
118 P A 0.0000
119 A A 0.0000
120 V A 0.0000
121 F A 0.0000
122 A A 0.0000
123 A A 0.0000
124 S A 0.0000
125 E A 0.0000
126 V A -0.8237
127 L A 0.0000
128 A A -1.8380
129 E A -2.6648
130 Q A -2.5612
131 G A -2.1306
132 K A -2.1163
133 T A -1.3856
134 I A 0.0000
135 S A -0.9181
136 G A 0.0000
137 I A -0.5284
138 D A -0.7922
139 V A 0.0000
140 I A 0.0000
141 L A 0.0000
142 A A 0.0000
143 A A 0.0000
144 I A 0.0000
145 V A 0.0000
146 G A 0.0000
147 F A 0.0000
148 E A 0.0000
149 S A 0.0000
150 G A 0.0000
151 P A 0.0000
152 R A 0.0000
153 I A 0.0000
154 G A 0.0000
155 K A -1.2480
156 A A 0.0000
157 I A 0.0000
158 Y A -0.6226
159 G A 0.0000
160 S A -0.7928
161 D A -1.0942
162 L A 0.0000
163 L A 0.0000
164 N A -1.8769
165 N A -1.6809
166 G A -0.5324
167 W A 0.3079
168 H A 0.0000
169 C A 0.0000
170 G A 0.0000
171 A A 0.0000
172 V A 0.0000
173 Y A 0.0000
174 G A 0.0000
175 A A 0.0000
176 P A 0.0000
177 A A 0.0000
178 G A 0.0000
179 A A 0.0000
180 L A 0.0000
181 A A 0.0000
182 T A 0.0000
183 G A 0.0000
184 K A -0.7107
185 L A 0.0000
186 L A 0.0000
187 G A -0.7490
188 L A 0.0000
189 T A -0.8393
190 P A -1.3741
191 D A -1.6658
192 S A -0.7988
193 M A 0.0000
194 E A 0.0000
195 D A 0.0000
196 A A 0.0000
197 L A 0.0000
198 G A 0.0000
199 I A 0.0000
200 A A 0.0000
201 C A 0.0000
202 T A -0.1427
203 Q A -0.1649
204 A A 0.0621
205 C A 0.6682
206 G A 0.0000
207 L A 1.6346
208 M A 0.0000
209 S A 0.7231
210 A A 0.0000
211 Q A 0.0000
212 Y A 1.1731
213 G A 0.5741
214 G A 0.6128
215 M A 0.6818
216 V A 1.3141
217 K A 0.0000
218 R A 0.0000
219 V A 0.0000
220 Q A 0.0000
221 H A 0.0000
222 G A 0.0000
223 F A 0.3097
224 A A 0.0000
225 A A 0.0000
226 R A 0.0019
227 N A 0.0000
228 G A 0.0000
229 L A 0.0000
230 L A 0.6247
231 G A 0.0000
232 G A 0.0000
233 L A 0.8621
234 L A 0.7683
235 A A 0.0000
236 Y A 0.3365
237 G A -0.0837
238 G A -0.2801
239 Y A 0.2669
240 E A -1.3257
241 A A -0.5095
242 M A -0.0325
243 K A -0.9827
244 G A -1.2303
245 V A 0.0000
246 L A 0.0000
247 E A -1.3305
248 R A -0.9703
249 S A -0.6195
250 Y A 0.4884
251 G A -0.2237
252 G A 0.0000
253 F A 0.0000
254 L A 0.0000
255 K A -1.7275
256 M A -0.7475
257 F A 0.0000
258 T A 0.0000
259 K A -2.4830
260 G A -1.9690
261 N A -2.1949
262 G A -2.0874
263 R A -2.8699
264 E A -2.7599
265 P A -2.0061
266 P A -2.2517
267 Y A -1.8555
268 K A -2.3329
269 E A -2.5636
270 E A -2.7268
271 E A -1.7954
272 V A 0.0000
273 V A -0.9554
274 A A -0.6670
275 G A -0.1645
276 L A 0.0407
277 G A -0.4673
278 S A -0.0510
279 F A 1.0623
280 W A 0.0000
281 H A 0.0000
282 T A 0.0000
283 F A 0.2749
284 T A -0.3018
285 I A 0.0000
286 R A 0.0000
287 I A 0.0000
288 K A 0.0000
289 L A 0.5292
290 Y A 0.4233
291 A A 0.0000
292 C A 0.0000
293 C A 0.0000
294 G A 0.0000
295 L A 0.0000
296 V A 0.0000
297 H A 0.0000
298 G A 0.0000
299 P A 0.0000
300 V A 0.0000
301 E A -0.4102
302 A A 0.0000
303 I A 0.0000
304 E A -1.7678
305 K A -2.0536
306 L A 0.0000
307 Q A 0.0000
308 R A -3.2153
309 R A -2.8804
310 Y A -1.6717
311 P A -2.2708
312 E A -2.4971
313 L A -1.1805
314 L A 0.0000
315 N A -2.3179
316 R A -2.7825
317 A A -1.5110
318 N A -1.6633
319 L A 0.0000
320 S A -1.8982
321 N A -1.9056
322 I A 0.0000
323 R A -2.9409
324 H A -1.7301
325 V A 0.0000
326 Y A -0.1892
327 V A 0.0000
328 Q A -1.1658
329 L A 0.0000
330 S A 0.0000
331 T A -1.3411
332 A A 0.0000
333 S A 0.0000
334 N A -0.7698
335 S A -0.8879
336 H A 0.0000
337 C A 0.0000
338 G A -0.2204
339 W A 0.2477
340 I A -0.3447
341 P A 0.0000
342 E A -3.0521
343 E A -3.3027
344 R A -2.9093
345 P A -2.4807
346 I A 0.0000
347 S A -0.7702
348 S A 0.0000
349 I A 0.0000
350 A A 0.0000
351 G A 0.0000
352 Q A 0.0000
353 M A 0.0000
354 S A 0.0000
355 V A 0.0000
356 A A 0.0000
357 Y A 0.0000
358 I A 0.0000
359 L A 0.0000
360 A A 0.0000
361 V A 0.0000
362 Q A 0.0000
363 L A 0.0000
364 V A 0.0000
365 D A -1.1752
366 Q A -1.5937
367 Q A -1.0754
368 C A 0.0000
369 L A 0.3709
370 L A 0.0000
371 A A -0.0498
372 Q A -0.3028
373 F A 0.0000
374 S A 0.0000
375 E A -2.2717
376 F A -1.3395
377 D A -2.8487
378 D A -3.2732
379 N A -2.2781
380 L A 0.0000
381 E A -2.5000
382 R A -2.2669
383 P A -2.0981
384 E A -2.7601
385 V A 0.0000
386 W A 0.0000
387 D A -2.7519
388 L A 0.0000
389 A A 0.0000
390 R A -2.4362
391 K A -1.8088
392 V A 0.0000
393 T A -0.2686
394 P A -0.2259
395 S A -0.6267
396 H A -1.5871
397 S A 0.0000
398 E A -3.0936
399 E A -3.0131
400 F A 0.0000
401 D A -3.3010
402 Q A -3.5156
403 D A -3.1128
404 G A -2.1890
405 N A -2.4779
406 C A 0.0000
407 L A -0.8688
408 S A 0.0000
409 A A 0.0000
410 G A 0.0000
411 R A -1.0165
412 V A 0.0000
413 R A -0.7931
414 I A 0.0000
415 E A 0.0000
416 F A 0.0000
417 N A -3.1505
418 D A -3.0055
419 G A -2.0881
420 S A -1.3782
421 S A -1.0603
422 V A 0.0000
423 T A -0.5713
424 E A -0.8782
425 T A -0.9944
426 V A 0.0000
427 E A -1.9350
428 K A -1.3296
429 P A 0.0000
430 L A 0.6500
431 G A -0.2995
432 V A -1.0704
433 K A -2.3810
434 E A -2.3313
435 P A -1.0291
436 M A 0.0000
437 P A -1.6797
438 N A -1.9800
439 E A -3.0449
440 R A -3.2039
441 I A 0.0000
442 L A -1.9109
443 H A -2.5042
444 K A -1.6098
445 Y A 0.0000
446 R A -2.1786
447 T A -0.9483
448 L A -0.5482
449 A A 0.0000
450 G A -1.8543
451 S A -1.1660
452 V A 0.0000
453 T A -1.6519
454 D A -2.5045
455 E A -3.4645
456 S A -2.5749
457 R A -2.5884
458 V A 0.0000
459 K A -3.7620
460 E A -3.2899
461 I A 0.0000
462 E A -2.0962
463 D A -2.6588
464 L A -1.4947
465 V A 0.0000
466 L A -0.7071
467 S A -1.1045
468 L A 0.0000
469 D A -1.2218
470 R A -1.8965
471 L A -1.0243
472 T A -0.8924
473 D A -1.1623
474 I A 0.0000
475 T A -0.7292
476 P A -0.9379
477 L A 0.0000
478 L A 0.0000
479 E A -1.6437
480 L A -0.9104
481 L A 0.0000
482 N A -1.0328
483 C A -0.4785
484 P A -0.6936
485 V A 0.0000
486 K A -1.5489
487 S A -0.5150
488 P A -0.0153
489 L A 0.6265
490 V A 1.6117
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.473 4.3059 View CSV PDB
4.5 -0.5348 4.2754 View CSV PDB
5.0 -0.6111 4.221 View CSV PDB
5.5 -0.69 4.1485 View CSV PDB
6.0 -0.7596 4.0701 View CSV PDB
6.5 -0.8099 3.9978 View CSV PDB
7.0 -0.838 3.9438 View CSV PDB
7.5 -0.8492 3.9138 View CSV PDB
8.0 -0.8498 3.9012 View CSV PDB
8.5 -0.8426 3.8968 View CSV PDB
9.0 -0.8276 3.8953 View CSV PDB