| Chain sequence(s) |
A: DVQLRESGGGKVQAGGSLRLSCTVSTSRFSGVGRMAWRRQAPGKQREKVAEITRAGSRTYADAVKGRFTISRDNAKNTVYLQMDRLKPEDTAVYWCVRARWQSGTPRTPGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | WK95A,SK21A,YK80A,VK93A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 5.21666 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:41)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:02:19)
[INFO] Main: Simulation completed successfully. (00:02:20)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | D | A | -1.9043 | |
| 2 | V | A | -1.6458 | |
| 3 | Q | A | -2.0144 | |
| 4 | L | A | -1.9688 | |
| 5 | R | A | -2.3686 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.4079 | |
| 8 | G | A | -1.4610 | |
| 9 | G | A | -1.7210 | |
| 10 | G | A | -1.6759 | |
| 11 | K | A | -2.2962 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -2.1165 | |
| 14 | A | A | -2.0937 | |
| 15 | G | A | -1.8658 | |
| 16 | G | A | -1.7156 | |
| 17 | S | A | -1.7494 | |
| 18 | L | A | -1.7912 | |
| 19 | R | A | -2.4316 | |
| 20 | L | A | 0.0000 | |
| 21 | K | A | -1.8025 | mutated: SK21A |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -1.4800 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -1.3565 | |
| 26 | T | A | -1.3028 | |
| 27 | S | A | -1.2283 | |
| 28 | R | A | -2.2670 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.7149 | |
| 31 | G | A | -1.7599 | |
| 32 | V | A | 0.0000 | |
| 33 | G | A | -2.0769 | |
| 34 | R | A | -2.6936 | |
| 35 | M | A | 0.0000 | |
| 36 | A | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | R | A | -1.2614 | |
| 39 | R | A | 0.0000 | |
| 40 | Q | A | -2.5556 | |
| 41 | A | A | -2.1917 | |
| 42 | P | A | -1.5465 | |
| 43 | G | A | -1.8390 | |
| 44 | K | A | -3.0286 | |
| 45 | Q | A | -2.8631 | |
| 46 | R | A | -2.6668 | |
| 47 | E | A | -2.3436 | |
| 48 | K | A | -1.3841 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | E | A | 0.0000 | |
| 52 | I | A | 0.0000 | |
| 53 | T | A | -2.1633 | |
| 54 | R | A | -2.7961 | |
| 55 | A | A | -1.4763 | |
| 56 | G | A | -1.6564 | |
| 57 | S | A | -1.5790 | |
| 58 | R | A | -1.9993 | |
| 59 | T | A | -1.2565 | |
| 60 | Y | A | -1.2862 | |
| 61 | A | A | -1.5610 | |
| 62 | D | A | -2.4024 | |
| 63 | A | A | -1.5973 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5789 | |
| 66 | G | A | -2.0018 | |
| 67 | R | A | -2.0869 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.2042 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -1.1430 | |
| 72 | R | A | -1.8810 | |
| 73 | D | A | -1.8171 | |
| 74 | N | A | -2.3519 | |
| 75 | A | A | -1.4984 | |
| 76 | K | A | -2.2807 | |
| 77 | N | A | -1.9576 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | K | A | -1.6469 | mutated: YK80A |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5507 | |
| 83 | M | A | 0.0000 | |
| 84 | D | A | -2.5076 | |
| 85 | R | A | -2.9283 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.7148 | |
| 88 | P | A | -1.8491 | |
| 89 | E | A | -2.3017 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.6237 | |
| 92 | A | A | 0.0000 | |
| 93 | K | A | -1.8314 | mutated: VK93A |
| 94 | Y | A | 0.0000 | |
| 95 | K | A | 0.0000 | mutated: WK95A |
| 96 | C | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | R | A | -2.2527 | |
| 99 | A | A | 0.0000 | |
| 100 | R | A | -2.6456 | |
| 101 | W | A | -1.5995 | |
| 102 | Q | A | -1.8279 | |
| 103 | S | A | -1.0231 | |
| 104 | G | A | -0.8252 | |
| 105 | T | A | -0.8757 | |
| 106 | P | A | -1.0868 | |
| 107 | R | A | -2.2587 | |
| 108 | T | A | 0.0000 | |
| 109 | P | A | -1.2371 | |
| 110 | G | A | -1.4384 | |
| 111 | T | A | -1.4634 | |
| 112 | Q | A | -2.1214 | |
| 113 | V | A | 0.0000 | |
| 114 | T | A | -1.7895 | |
| 115 | V | A | 0.0000 | |
| 116 | S | A | -1.4386 | |
| 117 | S | A | -1.0416 |