Project name: SU_E84_noloop

Status: done

Started: 2025-04-26 18:39:36
Chain sequence(s) A: NSMSLRKVLANPRFNAKDFVHDKLSNASAITIDKFTSNLTDLSIQVQEEVKLNINKSYNEIMTVNNDLNVAMLELKRVRGNINDLNETLDQFTKIAAKRLQLQNQINKERQDNARSSVFILEKLWDTELDQLFKNVEGAQKFINSTKGRHILMNSANWMELNITTGKLLQMVQIFILNDLVLIADKSRDKQNDFAVSQCYPLKDVTVTREEFSSKRLLFKFSNSNSSLYECREADECAKMLDVIRKAKDDLCDIFHVEEENSKRIRESFRYLQSTQQTPGRENNRSPKKSQRRSMGGSITPGRNISAHRLRFLDEGVEEIDIELARLRFETAVDVLLDIESQLQDLAEKLHNLISLKIEQRREAIASKLSQSILSSNEVMRLKSGTENMIKLGLPEQALDLFLQNRSNLIQDLILQIVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKKLSGKISSILVDWCSDEVDKHFKLIDKQLLNDSPSSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDKIR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:12:16)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/2222160f10a115f/tmp/folded.pdb                (00:12:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:16:10)
Show buried residues

Minimal score value
-4.8564
Maximal score value
1.5965
Average score
-1.1549
Total score value
-598.2631

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
169 N A -1.3598
170 S A -0.6477
171 M A 0.4447
172 S A 0.1724
173 L A -0.0794
174 R A -0.7067
175 K A -1.1441
176 V A 0.9000
177 L A -0.0022
178 A A -1.5592
179 N A -1.9776
180 P A -1.4294
181 R A -2.3471
182 F A 0.1879
183 N A -1.0395
184 A A -1.7067
185 K A -3.1709
186 D A -3.3782
187 F A -1.7838
188 V A 0.0000
189 H A -2.8113
190 D A -3.3299
191 K A -2.6117
192 L A -1.1824
193 S A -1.8319
194 N A -1.8487
195 A A -0.1248
196 S A -0.0000
197 A A 0.4660
198 I A 1.2104
199 T A 0.0952
200 I A 0.0551
201 D A -1.4621
202 K A -1.8922
203 F A -0.9468
204 T A -0.9284
205 S A -1.5017
206 N A -1.1131
207 L A -0.0649
208 T A -0.6160
209 D A -1.3063
210 L A -0.9699
211 S A -0.3936
212 I A -0.5807
213 Q A -1.2793
214 V A -0.5427
215 Q A -1.7100
216 E A -2.4217
217 E A -2.0617
218 V A -0.9384
219 K A -2.1551
220 L A -1.5181
221 N A -1.6023
222 I A -0.6625
223 N A -1.6484
224 K A -2.1364
225 S A -0.2944
226 Y A 0.1731
227 N A -1.5738
228 E A -1.3448
229 I A 1.0774
230 M A 0.1403
231 T A -0.6749
232 V A 0.7333
233 N A -0.7896
234 N A -1.5335
235 D A -1.1774
236 L A -0.0709
237 N A -1.0031
238 V A -0.0188
239 A A -0.3419
240 M A -0.1419
241 L A -0.3189
242 E A -1.5089
243 L A -1.0212
244 K A -2.7099
245 R A -2.9554
246 V A -1.4264
247 R A -2.8269
248 G A -3.0908
249 N A -2.8328
250 I A -1.6947
251 N A -3.3829
252 D A -3.4550
253 L A -1.6443
254 N A -2.9704
255 E A -3.2250
256 T A -1.3286
257 L A -0.6123
258 D A -2.4098
259 Q A -2.1862
260 F A 0.0260
261 T A -0.7329
262 K A -2.1414
263 I A -0.3352
264 A A -0.1673
265 A A -1.0469
266 K A -2.0025
267 R A -1.0747
268 L A -0.1539
269 Q A -1.8363
270 L A -0.8935
271 Q A -1.6933
272 N A -2.3819
273 Q A -2.1456
274 I A -1.5578
275 N A -3.1002
276 K A -4.4566
277 E A -4.8564
278 R A -4.6764
279 Q A -4.4642
280 D A -4.5426
281 N A -3.1124
282 A A -1.7106
309 R A -1.5082
310 S A -0.6489
311 S A 0.2202
312 V A 0.3849
313 F A 0.6512
314 I A 1.1554
315 L A 0.0810
316 E A -1.3160
317 K A -0.9766
318 L A 0.2714
319 W A -0.0853
320 D A -1.2866
321 T A -0.7775
322 E A -0.4219
323 L A -0.0598
324 D A -1.1759
325 Q A -0.4563
326 L A 0.3369
327 F A 0.3035
328 K A -1.4805
329 N A 0.0000
330 V A 0.4569
331 E A -1.8013
332 G A -1.0348
333 A A 0.0000
334 Q A 0.0000
335 K A 0.0000
336 F A 1.5965
337 I A 1.2310
338 N A -0.3429
339 S A -0.4785
340 T A -0.3719
341 K A -1.7170
342 G A -0.6903
343 R A 0.0000
344 H A 0.1346
345 I A 1.2358
346 L A 0.2336
347 M A 0.0977
348 N A -0.2896
349 S A -0.6369
350 A A 0.0000
351 N A -1.6753
352 W A 0.0000
353 M A -0.2974
354 E A -0.3168
355 L A 0.1160
356 N A -0.2479
357 I A 0.3744
358 T A -0.2576
359 T A -0.5395
360 G A -0.8041
361 K A -1.0347
362 L A 0.6760
363 L A 0.4025
364 Q A -0.6927
365 M A -0.5053
366 V A 0.0000
367 Q A 0.0000
368 I A 0.0000
369 F A 0.0000
370 I A 0.0000
371 L A 0.0000
372 N A -0.2660
373 D A -0.6612
374 L A -0.5419
375 V A 0.0000
376 L A 0.0000
377 I A 0.0000
378 A A 0.0000
379 D A 0.0000
380 K A -1.5942
381 S A -2.0261
382 R A -2.8217
383 D A -2.2252
384 K A -3.1393
385 Q A -2.7315
386 N A -1.5392
387 D A -0.7884
388 F A 1.3290
389 A A 0.0000
390 V A 1.5911
391 S A 1.1483
392 Q A 0.3670
393 C A 0.6780
394 Y A -0.0810
395 P A -0.6616
396 L A 0.0000
397 K A -2.0434
398 D A -1.8945
399 V A 0.0000
400 T A -0.3342
401 V A 0.0000
402 T A -0.6576
403 R A -2.3637
404 E A -1.2578
405 E A -1.0845
406 F A 0.6937
407 S A -0.1665
408 S A -0.7594
409 K A -2.3332
410 R A -3.0244
411 L A 0.0000
412 L A 0.0000
413 F A 0.2293
414 K A 0.0000
415 F A 1.3349
416 S A 0.0000
417 N A -1.1771
418 S A -0.6960
419 N A -0.4153
420 S A 0.4197
421 S A 0.0000
422 L A 0.0000
423 Y A 0.0000
424 E A -1.3560
425 C A 0.0000
426 R A -3.5082
427 E A -3.8083
428 A A -3.1598
429 D A -3.6112
430 E A -3.1911
431 C A 0.0000
432 A A -3.0412
433 K A -3.5098
434 M A 0.0000
435 L A 0.0000
436 D A -4.1372
437 V A -2.8400
438 I A 0.0000
439 R A -4.2050
440 K A -4.0336
441 A A 0.0000
442 K A -2.7669
443 D A -3.3859
444 D A -1.6892
445 L A -1.3614
446 C A -1.5252
447 D A -1.7567
448 I A 0.7660
449 F A 0.1916
450 H A -1.5969
451 V A -2.0823
452 E A -2.9803
453 E A -3.9098
454 E A -3.6890
455 N A -3.2704
456 S A -3.4761
457 K A -4.5627
458 R A -4.2907
459 I A -2.4247
460 R A -3.4021
461 E A -3.5990
462 S A -2.0838
463 F A -1.0773
464 R A -2.1740
465 Y A -0.6473
466 L A -0.7068
467 Q A -1.0572
468 S A -0.9291
469 T A -1.2584
470 Q A -1.5283
471 Q A -1.4866
472 T A -1.4278
473 P A -2.1565
474 G A -2.9477
475 R A -3.5052
476 E A -3.6519
477 N A -3.4790
478 N A -3.0221
479 R A -2.1340
480 S A -1.6139
481 P A -1.6596
482 K A -2.7547
483 K A -3.3460
484 S A -2.5839
485 Q A -2.7841
486 R A -3.0170
487 R A -2.7450
488 S A -1.3116
489 M A -0.7380
490 G A -1.0806
491 G A -0.9119
492 S A -0.4517
493 I A -0.2976
494 T A -0.8099
495 P A -0.9156
496 G A -1.2591
497 R A -2.0874
498 N A -1.3272
499 I A 0.7319
527 S A -1.3158
528 A A -0.6851
529 H A -1.6581
530 R A -2.0229
531 L A 0.0000
532 R A -0.9745
533 F A 0.0500
534 L A -0.7403
535 D A 0.0000
536 E A -2.0105
537 G A 0.0000
538 V A 0.0000
539 E A -1.5358
540 E A -1.6589
541 I A 0.0000
542 D A -0.7632
543 I A 0.4400
544 E A -0.8818
545 L A 0.0000
546 A A -0.3227
547 R A -1.1789
548 L A -0.1092
549 R A -1.5668
550 F A 0.0000
551 E A -2.0878
552 T A -1.3986
553 A A 0.0000
554 V A 0.0000
555 D A -2.1760
556 V A -1.2428
557 L A 0.0000
558 L A -1.2963
559 D A -2.1019
560 I A 0.0000
561 E A -1.9876
562 S A -1.6806
563 Q A -1.6582
564 L A -1.6034
565 Q A -2.5130
566 D A -2.8004
567 L A -1.5590
568 A A -2.0703
569 E A -3.0064
570 K A -2.6536
578 L A 0.4720
579 H A -0.3017
580 N A -0.9312
581 L A -0.9125
582 I A 0.0000
583 S A -1.1496
584 L A -1.4402
585 K A -1.6875
586 I A 0.0000
587 E A -3.1369
588 Q A -2.9490
589 R A -2.5088
590 R A -2.6515
591 E A -3.1583
592 A A -2.0080
593 I A 0.0000
594 A A -1.2288
595 S A -1.4939
596 K A -1.4082
597 L A 0.0000
598 S A -0.9015
599 Q A -1.3957
600 S A -0.8441
601 I A 0.0000
602 L A -0.3829
603 S A -0.8911
604 S A -0.8561
605 N A -1.4068
606 E A -0.6422
607 V A 0.7821
608 M A 0.4310
609 R A -1.5738
610 L A 0.0000
611 K A -0.7140
612 S A -0.8152
613 G A 0.0000
614 T A 0.0000
615 E A -1.3087
616 N A 0.0000
617 M A 0.0000
618 I A -0.7901
619 K A -1.7023
620 L A 0.0000
621 G A -0.8375
622 L A -0.4408
623 P A -0.9694
624 E A -1.8625
625 Q A -1.4975
626 A A 0.0000
627 L A 0.0000
628 D A -1.4508
629 L A -0.8984
630 F A 0.0000
631 L A 0.0000
632 Q A -1.0734
633 N A 0.0000
634 R A 0.0000
635 S A -1.4963
636 N A -2.2245
637 L A -1.3711
638 I A 0.0000
639 Q A -1.8956
640 D A -1.7114
641 L A -0.2952
642 I A 0.0325
643 L A 0.6617
644 Q A -0.3600
645 I A 0.5652
648 V A 0.2370
649 D A -1.6954
650 N A -1.9529
651 P A -1.3100
652 T A -1.1207
653 N A -1.7701
654 Y A -0.6384
655 L A -0.0835
656 T A -0.6271
657 Q A -0.3008
658 L A 0.0000
659 A A 0.0000
660 V A 0.0379
661 I A 0.1646
662 R A 0.0000
663 F A 0.0000
664 Q A -1.4647
665 T A -1.2127
666 I A 0.0000
667 K A -2.0945
668 K A -2.7705
669 T A 0.0000
670 V A 0.0000
671 E A -3.2971
672 D A -2.3610
673 F A 0.0000
674 Q A -3.4100
675 D A -3.4787
676 I A 0.0000
677 F A 0.0000
678 K A -2.7897
679 K A -2.6224
680 L A -1.4939
681 S A -1.4985
682 G A -1.5037
683 K A -1.8303
684 I A -1.0706
685 S A -0.6634
686 S A -0.5405
687 I A -0.5211
688 L A 0.0000
689 V A 0.3708
690 D A -1.4231
691 W A 0.0000
692 C A 0.0000
693 S A -1.3414
694 D A -2.5062
695 E A 0.0000
696 V A 0.0000
697 D A -2.0554
698 K A -2.2861
699 H A 0.0000
700 F A 0.0000
701 K A -2.8693
702 L A -1.8406
703 I A -1.3950
704 D A -2.1427
705 K A -2.5601
706 Q A -1.8723
707 L A -1.2029
708 L A -0.3820
709 N A -1.5422
710 D A -2.1771
714 S A -1.1826
715 P A -1.1382
716 S A -1.1297
717 S A -0.8882
718 I A -0.9810
719 K A -2.4120
720 S A -1.9184
721 S A 0.0000
722 R A -2.5308
723 K A -3.2519
724 Q A -2.3216
725 I A 0.0000
726 D A -3.2380
727 G A -2.1720
728 L A 0.0000
729 K A -2.2763
730 A A -0.9957
731 V A -0.9048
732 G A -1.1178
733 L A -0.9096
734 D A -1.4260
735 F A 0.0000
736 V A -0.6753
737 Y A 0.5482
738 K A -0.6082
739 L A 0.0000
740 D A -1.3617
741 E A -2.4491
742 F A -1.7481
743 I A -1.6914
744 K A -3.3032
745 K A -3.2011
746 N A -2.4726
747 S A -2.6672
748 D A -3.1385
749 K A -2.7680
750 I A -1.6719
751 R A -2.5483
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -1.0128 4.5566 View CSV PDB
4.5 -1.1189 4.5128 View CSV PDB
5.0 -1.2496 4.4426 View CSV PDB
5.5 -1.3792 4.3581 View CSV PDB
6.0 -1.4804 4.2784 View CSV PDB
6.5 -1.5359 4.2185 View CSV PDB
7.0 -1.5471 4.1838 View CSV PDB
7.5 -1.5281 4.1721 View CSV PDB
8.0 -1.4918 4.1759 View CSV PDB
8.5 -1.4419 4.1882 View CSV PDB
9.0 -1.375 4.2071 View CSV PDB