Chain sequence(s) |
A: NSMSLRKVLANPRFNAKDFVHDKLSNASAITIDKFTSNLTDLSIQVQEEVKLNINKSYNEIMTVNNDLNVAMLELKRVRGNINDLNETLDQFTKIAAKRLQLQNQINKERQDNARSSVFILEKLWDTELDQLFKNVEGAQKFINSTKGRHILMNSANWMELNITTGKLLQMVQIFILNDLVLIADKSRDKQNDFAVSQCYPLKDVTVTREEFSSKRLLFKFSNSNSSLYECREADECAKMLDVIRKAKDDLCDIFHVEEENSKRIRESFRYLQSTQQTPGRENNRSPKKSQRRSMGGSITPGRNISAHRLRFLDEGVEEIDIELARLRFETAVDVLLDIESQLQDLAEKLHNLISLKIEQRREAIASKLSQSILSSNEVMRLKSGTENMIKLGLPEQALDLFLQNRSNLIQDLILQIVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKKLSGKISSILVDWCSDEVDKHFKLIDKQLLNDSPSSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDKIR
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | Yes |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] PDB-Info: The input structure is partially or entirely disordered. Average score is recommended for pH analysis. (00:00:02) [INFO] FoldX: Starting FoldX energy minimization (00:00:02) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:12:16) [INFO] agg3D: Running pKa-ANI on /STORAGE/DATA/lcbio/aggreskan/2222160f10a115f/tmp/folded.pdb (00:12:16) [INFO] Main: Simulation completed successfully. (00:16:10) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
169 | N | A | -1.3598 | |
170 | S | A | -0.6477 | |
171 | M | A | 0.4447 | |
172 | S | A | 0.1724 | |
173 | L | A | -0.0794 | |
174 | R | A | -0.7067 | |
175 | K | A | -1.1441 | |
176 | V | A | 0.9000 | |
177 | L | A | -0.0022 | |
178 | A | A | -1.5592 | |
179 | N | A | -1.9776 | |
180 | P | A | -1.4294 | |
181 | R | A | -2.3471 | |
182 | F | A | 0.1879 | |
183 | N | A | -1.0395 | |
184 | A | A | -1.7067 | |
185 | K | A | -3.1709 | |
186 | D | A | -3.3782 | |
187 | F | A | -1.7838 | |
188 | V | A | 0.0000 | |
189 | H | A | -2.8113 | |
190 | D | A | -3.3299 | |
191 | K | A | -2.6117 | |
192 | L | A | -1.1824 | |
193 | S | A | -1.8319 | |
194 | N | A | -1.8487 | |
195 | A | A | -0.1248 | |
196 | S | A | -0.0000 | |
197 | A | A | 0.4660 | |
198 | I | A | 1.2104 | |
199 | T | A | 0.0952 | |
200 | I | A | 0.0551 | |
201 | D | A | -1.4621 | |
202 | K | A | -1.8922 | |
203 | F | A | -0.9468 | |
204 | T | A | -0.9284 | |
205 | S | A | -1.5017 | |
206 | N | A | -1.1131 | |
207 | L | A | -0.0649 | |
208 | T | A | -0.6160 | |
209 | D | A | -1.3063 | |
210 | L | A | -0.9699 | |
211 | S | A | -0.3936 | |
212 | I | A | -0.5807 | |
213 | Q | A | -1.2793 | |
214 | V | A | -0.5427 | |
215 | Q | A | -1.7100 | |
216 | E | A | -2.4217 | |
217 | E | A | -2.0617 | |
218 | V | A | -0.9384 | |
219 | K | A | -2.1551 | |
220 | L | A | -1.5181 | |
221 | N | A | -1.6023 | |
222 | I | A | -0.6625 | |
223 | N | A | -1.6484 | |
224 | K | A | -2.1364 | |
225 | S | A | -0.2944 | |
226 | Y | A | 0.1731 | |
227 | N | A | -1.5738 | |
228 | E | A | -1.3448 | |
229 | I | A | 1.0774 | |
230 | M | A | 0.1403 | |
231 | T | A | -0.6749 | |
232 | V | A | 0.7333 | |
233 | N | A | -0.7896 | |
234 | N | A | -1.5335 | |
235 | D | A | -1.1774 | |
236 | L | A | -0.0709 | |
237 | N | A | -1.0031 | |
238 | V | A | -0.0188 | |
239 | A | A | -0.3419 | |
240 | M | A | -0.1419 | |
241 | L | A | -0.3189 | |
242 | E | A | -1.5089 | |
243 | L | A | -1.0212 | |
244 | K | A | -2.7099 | |
245 | R | A | -2.9554 | |
246 | V | A | -1.4264 | |
247 | R | A | -2.8269 | |
248 | G | A | -3.0908 | |
249 | N | A | -2.8328 | |
250 | I | A | -1.6947 | |
251 | N | A | -3.3829 | |
252 | D | A | -3.4550 | |
253 | L | A | -1.6443 | |
254 | N | A | -2.9704 | |
255 | E | A | -3.2250 | |
256 | T | A | -1.3286 | |
257 | L | A | -0.6123 | |
258 | D | A | -2.4098 | |
259 | Q | A | -2.1862 | |
260 | F | A | 0.0260 | |
261 | T | A | -0.7329 | |
262 | K | A | -2.1414 | |
263 | I | A | -0.3352 | |
264 | A | A | -0.1673 | |
265 | A | A | -1.0469 | |
266 | K | A | -2.0025 | |
267 | R | A | -1.0747 | |
268 | L | A | -0.1539 | |
269 | Q | A | -1.8363 | |
270 | L | A | -0.8935 | |
271 | Q | A | -1.6933 | |
272 | N | A | -2.3819 | |
273 | Q | A | -2.1456 | |
274 | I | A | -1.5578 | |
275 | N | A | -3.1002 | |
276 | K | A | -4.4566 | |
277 | E | A | -4.8564 | |
278 | R | A | -4.6764 | |
279 | Q | A | -4.4642 | |
280 | D | A | -4.5426 | |
281 | N | A | -3.1124 | |
282 | A | A | -1.7106 | |
309 | R | A | -1.5082 | |
310 | S | A | -0.6489 | |
311 | S | A | 0.2202 | |
312 | V | A | 0.3849 | |
313 | F | A | 0.6512 | |
314 | I | A | 1.1554 | |
315 | L | A | 0.0810 | |
316 | E | A | -1.3160 | |
317 | K | A | -0.9766 | |
318 | L | A | 0.2714 | |
319 | W | A | -0.0853 | |
320 | D | A | -1.2866 | |
321 | T | A | -0.7775 | |
322 | E | A | -0.4219 | |
323 | L | A | -0.0598 | |
324 | D | A | -1.1759 | |
325 | Q | A | -0.4563 | |
326 | L | A | 0.3369 | |
327 | F | A | 0.3035 | |
328 | K | A | -1.4805 | |
329 | N | A | 0.0000 | |
330 | V | A | 0.4569 | |
331 | E | A | -1.8013 | |
332 | G | A | -1.0348 | |
333 | A | A | 0.0000 | |
334 | Q | A | 0.0000 | |
335 | K | A | 0.0000 | |
336 | F | A | 1.5965 | |
337 | I | A | 1.2310 | |
338 | N | A | -0.3429 | |
339 | S | A | -0.4785 | |
340 | T | A | -0.3719 | |
341 | K | A | -1.7170 | |
342 | G | A | -0.6903 | |
343 | R | A | 0.0000 | |
344 | H | A | 0.1346 | |
345 | I | A | 1.2358 | |
346 | L | A | 0.2336 | |
347 | M | A | 0.0977 | |
348 | N | A | -0.2896 | |
349 | S | A | -0.6369 | |
350 | A | A | 0.0000 | |
351 | N | A | -1.6753 | |
352 | W | A | 0.0000 | |
353 | M | A | -0.2974 | |
354 | E | A | -0.3168 | |
355 | L | A | 0.1160 | |
356 | N | A | -0.2479 | |
357 | I | A | 0.3744 | |
358 | T | A | -0.2576 | |
359 | T | A | -0.5395 | |
360 | G | A | -0.8041 | |
361 | K | A | -1.0347 | |
362 | L | A | 0.6760 | |
363 | L | A | 0.4025 | |
364 | Q | A | -0.6927 | |
365 | M | A | -0.5053 | |
366 | V | A | 0.0000 | |
367 | Q | A | 0.0000 | |
368 | I | A | 0.0000 | |
369 | F | A | 0.0000 | |
370 | I | A | 0.0000 | |
371 | L | A | 0.0000 | |
372 | N | A | -0.2660 | |
373 | D | A | -0.6612 | |
374 | L | A | -0.5419 | |
375 | V | A | 0.0000 | |
376 | L | A | 0.0000 | |
377 | I | A | 0.0000 | |
378 | A | A | 0.0000 | |
379 | D | A | 0.0000 | |
380 | K | A | -1.5942 | |
381 | S | A | -2.0261 | |
382 | R | A | -2.8217 | |
383 | D | A | -2.2252 | |
384 | K | A | -3.1393 | |
385 | Q | A | -2.7315 | |
386 | N | A | -1.5392 | |
387 | D | A | -0.7884 | |
388 | F | A | 1.3290 | |
389 | A | A | 0.0000 | |
390 | V | A | 1.5911 | |
391 | S | A | 1.1483 | |
392 | Q | A | 0.3670 | |
393 | C | A | 0.6780 | |
394 | Y | A | -0.0810 | |
395 | P | A | -0.6616 | |
396 | L | A | 0.0000 | |
397 | K | A | -2.0434 | |
398 | D | A | -1.8945 | |
399 | V | A | 0.0000 | |
400 | T | A | -0.3342 | |
401 | V | A | 0.0000 | |
402 | T | A | -0.6576 | |
403 | R | A | -2.3637 | |
404 | E | A | -1.2578 | |
405 | E | A | -1.0845 | |
406 | F | A | 0.6937 | |
407 | S | A | -0.1665 | |
408 | S | A | -0.7594 | |
409 | K | A | -2.3332 | |
410 | R | A | -3.0244 | |
411 | L | A | 0.0000 | |
412 | L | A | 0.0000 | |
413 | F | A | 0.2293 | |
414 | K | A | 0.0000 | |
415 | F | A | 1.3349 | |
416 | S | A | 0.0000 | |
417 | N | A | -1.1771 | |
418 | S | A | -0.6960 | |
419 | N | A | -0.4153 | |
420 | S | A | 0.4197 | |
421 | S | A | 0.0000 | |
422 | L | A | 0.0000 | |
423 | Y | A | 0.0000 | |
424 | E | A | -1.3560 | |
425 | C | A | 0.0000 | |
426 | R | A | -3.5082 | |
427 | E | A | -3.8083 | |
428 | A | A | -3.1598 | |
429 | D | A | -3.6112 | |
430 | E | A | -3.1911 | |
431 | C | A | 0.0000 | |
432 | A | A | -3.0412 | |
433 | K | A | -3.5098 | |
434 | M | A | 0.0000 | |
435 | L | A | 0.0000 | |
436 | D | A | -4.1372 | |
437 | V | A | -2.8400 | |
438 | I | A | 0.0000 | |
439 | R | A | -4.2050 | |
440 | K | A | -4.0336 | |
441 | A | A | 0.0000 | |
442 | K | A | -2.7669 | |
443 | D | A | -3.3859 | |
444 | D | A | -1.6892 | |
445 | L | A | -1.3614 | |
446 | C | A | -1.5252 | |
447 | D | A | -1.7567 | |
448 | I | A | 0.7660 | |
449 | F | A | 0.1916 | |
450 | H | A | -1.5969 | |
451 | V | A | -2.0823 | |
452 | E | A | -2.9803 | |
453 | E | A | -3.9098 | |
454 | E | A | -3.6890 | |
455 | N | A | -3.2704 | |
456 | S | A | -3.4761 | |
457 | K | A | -4.5627 | |
458 | R | A | -4.2907 | |
459 | I | A | -2.4247 | |
460 | R | A | -3.4021 | |
461 | E | A | -3.5990 | |
462 | S | A | -2.0838 | |
463 | F | A | -1.0773 | |
464 | R | A | -2.1740 | |
465 | Y | A | -0.6473 | |
466 | L | A | -0.7068 | |
467 | Q | A | -1.0572 | |
468 | S | A | -0.9291 | |
469 | T | A | -1.2584 | |
470 | Q | A | -1.5283 | |
471 | Q | A | -1.4866 | |
472 | T | A | -1.4278 | |
473 | P | A | -2.1565 | |
474 | G | A | -2.9477 | |
475 | R | A | -3.5052 | |
476 | E | A | -3.6519 | |
477 | N | A | -3.4790 | |
478 | N | A | -3.0221 | |
479 | R | A | -2.1340 | |
480 | S | A | -1.6139 | |
481 | P | A | -1.6596 | |
482 | K | A | -2.7547 | |
483 | K | A | -3.3460 | |
484 | S | A | -2.5839 | |
485 | Q | A | -2.7841 | |
486 | R | A | -3.0170 | |
487 | R | A | -2.7450 | |
488 | S | A | -1.3116 | |
489 | M | A | -0.7380 | |
490 | G | A | -1.0806 | |
491 | G | A | -0.9119 | |
492 | S | A | -0.4517 | |
493 | I | A | -0.2976 | |
494 | T | A | -0.8099 | |
495 | P | A | -0.9156 | |
496 | G | A | -1.2591 | |
497 | R | A | -2.0874 | |
498 | N | A | -1.3272 | |
499 | I | A | 0.7319 | |
527 | S | A | -1.3158 | |
528 | A | A | -0.6851 | |
529 | H | A | -1.6581 | |
530 | R | A | -2.0229 | |
531 | L | A | 0.0000 | |
532 | R | A | -0.9745 | |
533 | F | A | 0.0500 | |
534 | L | A | -0.7403 | |
535 | D | A | 0.0000 | |
536 | E | A | -2.0105 | |
537 | G | A | 0.0000 | |
538 | V | A | 0.0000 | |
539 | E | A | -1.5358 | |
540 | E | A | -1.6589 | |
541 | I | A | 0.0000 | |
542 | D | A | -0.7632 | |
543 | I | A | 0.4400 | |
544 | E | A | -0.8818 | |
545 | L | A | 0.0000 | |
546 | A | A | -0.3227 | |
547 | R | A | -1.1789 | |
548 | L | A | -0.1092 | |
549 | R | A | -1.5668 | |
550 | F | A | 0.0000 | |
551 | E | A | -2.0878 | |
552 | T | A | -1.3986 | |
553 | A | A | 0.0000 | |
554 | V | A | 0.0000 | |
555 | D | A | -2.1760 | |
556 | V | A | -1.2428 | |
557 | L | A | 0.0000 | |
558 | L | A | -1.2963 | |
559 | D | A | -2.1019 | |
560 | I | A | 0.0000 | |
561 | E | A | -1.9876 | |
562 | S | A | -1.6806 | |
563 | Q | A | -1.6582 | |
564 | L | A | -1.6034 | |
565 | Q | A | -2.5130 | |
566 | D | A | -2.8004 | |
567 | L | A | -1.5590 | |
568 | A | A | -2.0703 | |
569 | E | A | -3.0064 | |
570 | K | A | -2.6536 | |
578 | L | A | 0.4720 | |
579 | H | A | -0.3017 | |
580 | N | A | -0.9312 | |
581 | L | A | -0.9125 | |
582 | I | A | 0.0000 | |
583 | S | A | -1.1496 | |
584 | L | A | -1.4402 | |
585 | K | A | -1.6875 | |
586 | I | A | 0.0000 | |
587 | E | A | -3.1369 | |
588 | Q | A | -2.9490 | |
589 | R | A | -2.5088 | |
590 | R | A | -2.6515 | |
591 | E | A | -3.1583 | |
592 | A | A | -2.0080 | |
593 | I | A | 0.0000 | |
594 | A | A | -1.2288 | |
595 | S | A | -1.4939 | |
596 | K | A | -1.4082 | |
597 | L | A | 0.0000 | |
598 | S | A | -0.9015 | |
599 | Q | A | -1.3957 | |
600 | S | A | -0.8441 | |
601 | I | A | 0.0000 | |
602 | L | A | -0.3829 | |
603 | S | A | -0.8911 | |
604 | S | A | -0.8561 | |
605 | N | A | -1.4068 | |
606 | E | A | -0.6422 | |
607 | V | A | 0.7821 | |
608 | M | A | 0.4310 | |
609 | R | A | -1.5738 | |
610 | L | A | 0.0000 | |
611 | K | A | -0.7140 | |
612 | S | A | -0.8152 | |
613 | G | A | 0.0000 | |
614 | T | A | 0.0000 | |
615 | E | A | -1.3087 | |
616 | N | A | 0.0000 | |
617 | M | A | 0.0000 | |
618 | I | A | -0.7901 | |
619 | K | A | -1.7023 | |
620 | L | A | 0.0000 | |
621 | G | A | -0.8375 | |
622 | L | A | -0.4408 | |
623 | P | A | -0.9694 | |
624 | E | A | -1.8625 | |
625 | Q | A | -1.4975 | |
626 | A | A | 0.0000 | |
627 | L | A | 0.0000 | |
628 | D | A | -1.4508 | |
629 | L | A | -0.8984 | |
630 | F | A | 0.0000 | |
631 | L | A | 0.0000 | |
632 | Q | A | -1.0734 | |
633 | N | A | 0.0000 | |
634 | R | A | 0.0000 | |
635 | S | A | -1.4963 | |
636 | N | A | -2.2245 | |
637 | L | A | -1.3711 | |
638 | I | A | 0.0000 | |
639 | Q | A | -1.8956 | |
640 | D | A | -1.7114 | |
641 | L | A | -0.2952 | |
642 | I | A | 0.0325 | |
643 | L | A | 0.6617 | |
644 | Q | A | -0.3600 | |
645 | I | A | 0.5652 | |
648 | V | A | 0.2370 | |
649 | D | A | -1.6954 | |
650 | N | A | -1.9529 | |
651 | P | A | -1.3100 | |
652 | T | A | -1.1207 | |
653 | N | A | -1.7701 | |
654 | Y | A | -0.6384 | |
655 | L | A | -0.0835 | |
656 | T | A | -0.6271 | |
657 | Q | A | -0.3008 | |
658 | L | A | 0.0000 | |
659 | A | A | 0.0000 | |
660 | V | A | 0.0379 | |
661 | I | A | 0.1646 | |
662 | R | A | 0.0000 | |
663 | F | A | 0.0000 | |
664 | Q | A | -1.4647 | |
665 | T | A | -1.2127 | |
666 | I | A | 0.0000 | |
667 | K | A | -2.0945 | |
668 | K | A | -2.7705 | |
669 | T | A | 0.0000 | |
670 | V | A | 0.0000 | |
671 | E | A | -3.2971 | |
672 | D | A | -2.3610 | |
673 | F | A | 0.0000 | |
674 | Q | A | -3.4100 | |
675 | D | A | -3.4787 | |
676 | I | A | 0.0000 | |
677 | F | A | 0.0000 | |
678 | K | A | -2.7897 | |
679 | K | A | -2.6224 | |
680 | L | A | -1.4939 | |
681 | S | A | -1.4985 | |
682 | G | A | -1.5037 | |
683 | K | A | -1.8303 | |
684 | I | A | -1.0706 | |
685 | S | A | -0.6634 | |
686 | S | A | -0.5405 | |
687 | I | A | -0.5211 | |
688 | L | A | 0.0000 | |
689 | V | A | 0.3708 | |
690 | D | A | -1.4231 | |
691 | W | A | 0.0000 | |
692 | C | A | 0.0000 | |
693 | S | A | -1.3414 | |
694 | D | A | -2.5062 | |
695 | E | A | 0.0000 | |
696 | V | A | 0.0000 | |
697 | D | A | -2.0554 | |
698 | K | A | -2.2861 | |
699 | H | A | 0.0000 | |
700 | F | A | 0.0000 | |
701 | K | A | -2.8693 | |
702 | L | A | -1.8406 | |
703 | I | A | -1.3950 | |
704 | D | A | -2.1427 | |
705 | K | A | -2.5601 | |
706 | Q | A | -1.8723 | |
707 | L | A | -1.2029 | |
708 | L | A | -0.3820 | |
709 | N | A | -1.5422 | |
710 | D | A | -2.1771 | |
714 | S | A | -1.1826 | |
715 | P | A | -1.1382 | |
716 | S | A | -1.1297 | |
717 | S | A | -0.8882 | |
718 | I | A | -0.9810 | |
719 | K | A | -2.4120 | |
720 | S | A | -1.9184 | |
721 | S | A | 0.0000 | |
722 | R | A | -2.5308 | |
723 | K | A | -3.2519 | |
724 | Q | A | -2.3216 | |
725 | I | A | 0.0000 | |
726 | D | A | -3.2380 | |
727 | G | A | -2.1720 | |
728 | L | A | 0.0000 | |
729 | K | A | -2.2763 | |
730 | A | A | -0.9957 | |
731 | V | A | -0.9048 | |
732 | G | A | -1.1178 | |
733 | L | A | -0.9096 | |
734 | D | A | -1.4260 | |
735 | F | A | 0.0000 | |
736 | V | A | -0.6753 | |
737 | Y | A | 0.5482 | |
738 | K | A | -0.6082 | |
739 | L | A | 0.0000 | |
740 | D | A | -1.3617 | |
741 | E | A | -2.4491 | |
742 | F | A | -1.7481 | |
743 | I | A | -1.6914 | |
744 | K | A | -3.3032 | |
745 | K | A | -3.2011 | |
746 | N | A | -2.4726 | |
747 | S | A | -2.6672 | |
748 | D | A | -3.1385 | |
749 | K | A | -2.7680 | |
750 | I | A | -1.6719 | |
751 | R | A | -2.5483 |
Calculations for various pH values
This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.
pH |
Average A4D Score |
Max A4D Score |
|||
4.0 | -1.0128 | 4.5566 | View | CSV | PDB |
4.5 | -1.1189 | 4.5128 | View | CSV | PDB |
5.0 | -1.2496 | 4.4426 | View | CSV | PDB |
5.5 | -1.3792 | 4.3581 | View | CSV | PDB |
6.0 | -1.4804 | 4.2784 | View | CSV | PDB |
6.5 | -1.5359 | 4.2185 | View | CSV | PDB |
7.0 | -1.5471 | 4.1838 | View | CSV | PDB |
7.5 | -1.5281 | 4.1721 | View | CSV | PDB |
8.0 | -1.4918 | 4.1759 | View | CSV | PDB |
8.5 | -1.4419 | 4.1882 | View | CSV | PDB |
9.0 | -1.375 | 4.2071 | View | CSV | PDB |