| Chain sequence(s) |
A: QCISPGTGYNNGYFYSYWNDGRGGVTYCNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWTRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYQTQRVNQPSIIGTATFYQYWSVRRNHRSSGTVNTANHFNAWAQLGLTLGTMDYQIVAVEGYFSSGSADITVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimization (00:00:02)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:02:38)
[INFO] Main: Simulation completed successfully. (00:02:41)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | Q | A | -0.7447 | |
| 2 | C | A | 0.3687 | |
| 3 | I | A | 0.4018 | |
| 4 | S | A | 0.1077 | |
| 5 | P | A | -0.3024 | |
| 6 | G | A | -0.2413 | |
| 7 | T | A | 0.1232 | |
| 8 | G | A | 0.4482 | |
| 9 | Y | A | 0.8582 | |
| 10 | N | A | -0.4550 | |
| 11 | N | A | -1.3971 | |
| 12 | G | A | -0.7368 | |
| 13 | Y | A | -0.1805 | |
| 14 | F | A | 0.0000 | |
| 15 | Y | A | 0.2591 | |
| 16 | S | A | 0.0000 | |
| 17 | Y | A | 0.0000 | |
| 18 | W | A | -0.1628 | |
| 19 | N | A | -1.1492 | |
| 20 | D | A | -1.9702 | |
| 21 | G | A | -1.9532 | |
| 22 | R | A | -2.3820 | |
| 23 | G | A | -1.8800 | |
| 24 | G | A | -1.3060 | |
| 25 | V | A | -1.0387 | |
| 26 | T | A | -0.2877 | |
| 27 | Y | A | 0.0000 | |
| 28 | C | A | -0.1461 | |
| 29 | N | A | 0.0000 | |
| 30 | G | A | -0.8833 | |
| 31 | P | A | -1.0512 | |
| 32 | G | A | -1.0796 | |
| 33 | G | A | 0.0000 | |
| 34 | Q | A | -0.9188 | |
| 35 | F | A | 0.0000 | |
| 36 | S | A | -0.8037 | |
| 37 | V | A | 0.0000 | |
| 38 | N | A | -1.5520 | |
| 39 | W | A | 0.0000 | |
| 40 | S | A | -1.1626 | |
| 41 | N | A | -1.2257 | |
| 42 | S | A | 0.0000 | |
| 43 | G | A | 0.0000 | |
| 44 | N | A | -0.3022 | |
| 45 | F | A | 0.0000 | |
| 46 | V | A | 0.0000 | |
| 47 | G | A | 0.0000 | |
| 48 | G | A | 0.0000 | |
| 49 | K | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | W | A | 0.0366 | |
| 52 | Q | A | -0.2724 | |
| 53 | P | A | -0.4434 | |
| 54 | G | A | 0.0000 | |
| 55 | T | A | -1.0315 | |
| 56 | K | A | -1.8665 | |
| 57 | N | A | -2.0651 | |
| 58 | K | A | -1.1297 | |
| 59 | V | A | -0.1528 | |
| 60 | I | A | 0.0000 | |
| 61 | N | A | -0.8265 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.7612 | |
| 64 | G | A | -0.7766 | |
| 65 | S | A | -0.9621 | |
| 66 | Y | A | -1.0917 | |
| 67 | N | A | -1.8671 | |
| 68 | P | A | -1.6027 | |
| 69 | N | A | -1.7473 | |
| 70 | G | A | -0.6642 | |
| 71 | N | A | 0.0473 | |
| 72 | S | A | 0.0000 | |
| 73 | Y | A | 0.0000 | |
| 74 | L | A | 0.0000 | |
| 75 | S | A | 0.0000 | |
| 76 | V | A | 0.0000 | |
| 77 | Y | A | 0.0000 | |
| 78 | G | A | 0.0000 | |
| 79 | W | A | 0.0000 | |
| 80 | T | A | 0.0000 | |
| 81 | R | A | -1.5896 | |
| 82 | N | A | -1.9358 | |
| 83 | P | A | -1.1757 | |
| 84 | L | A | -0.3529 | |
| 85 | I | A | 0.0000 | |
| 86 | E | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | Y | A | 0.0000 | |
| 89 | I | A | 0.0000 | |
| 90 | V | A | 0.0000 | |
| 91 | E | A | 0.0000 | |
| 92 | N | A | -0.8761 | |
| 93 | F | A | -0.3826 | |
| 94 | G | A | -0.6989 | |
| 95 | T | A | -0.3211 | |
| 96 | Y | A | 0.2281 | |
| 97 | N | A | -0.3325 | |
| 98 | P | A | 0.0000 | |
| 99 | S | A | 0.0000 | |
| 100 | T | A | -0.5029 | |
| 101 | G | A | -0.7721 | |
| 102 | A | A | -0.7335 | |
| 103 | T | A | -0.8791 | |
| 104 | K | A | -1.6115 | |
| 105 | L | A | -0.4673 | |
| 106 | G | A | -1.0468 | |
| 107 | E | A | -1.6831 | |
| 108 | V | A | -0.8314 | |
| 109 | T | A | -0.4647 | |
| 110 | S | A | 0.0000 | |
| 111 | D | A | -0.8901 | |
| 112 | G | A | -0.8578 | |
| 113 | S | A | 0.0000 | |
| 114 | V | A | -0.8316 | |
| 115 | Y | A | 0.0000 | |
| 116 | D | A | 0.0000 | |
| 117 | I | A | 0.0000 | |
| 118 | Y | A | -0.6976 | |
| 119 | Q | A | -0.4681 | |
| 120 | T | A | -0.5636 | |
| 121 | Q | A | -0.7377 | |
| 122 | R | A | -0.7521 | |
| 123 | V | A | 0.3629 | |
| 124 | N | A | -1.1470 | |
| 125 | Q | A | -1.2363 | |
| 126 | P | A | -0.5332 | |
| 127 | S | A | 0.2915 | |
| 128 | I | A | 1.2865 | |
| 129 | I | A | 1.9471 | |
| 130 | G | A | 0.4432 | |
| 131 | T | A | -0.1711 | |
| 132 | A | A | -0.0506 | |
| 133 | T | A | -0.2786 | |
| 134 | F | A | 0.0000 | |
| 135 | Y | A | 0.2654 | |
| 136 | Q | A | 0.0000 | |
| 137 | Y | A | 0.0000 | |
| 138 | W | A | 0.0000 | |
| 139 | S | A | 0.0000 | |
| 140 | V | A | 0.0000 | |
| 141 | R | A | 0.0000 | |
| 142 | R | A | -2.5152 | |
| 143 | N | A | -2.4711 | |
| 144 | H | A | -1.7883 | |
| 145 | R | A | -1.1754 | |
| 146 | S | A | -0.7288 | |
| 147 | S | A | -0.6439 | |
| 148 | G | A | -0.6805 | |
| 149 | T | A | -0.5225 | |
| 150 | V | A | 0.0000 | |
| 151 | N | A | -0.8375 | |
| 152 | T | A | 0.0000 | |
| 153 | A | A | 0.0000 | |
| 154 | N | A | -1.3677 | |
| 155 | H | A | 0.0000 | |
| 156 | F | A | 0.0000 | |
| 157 | N | A | -1.9397 | |
| 158 | A | A | -1.3365 | |
| 159 | W | A | 0.0000 | |
| 160 | A | A | -0.9171 | |
| 161 | Q | A | -1.3568 | |
| 162 | L | A | -0.3964 | |
| 163 | G | A | -0.5833 | |
| 164 | L | A | 0.0000 | |
| 165 | T | A | -0.5039 | |
| 166 | L | A | -0.6351 | |
| 167 | G | A | -1.0429 | |
| 168 | T | A | -0.9479 | |
| 169 | M | A | -0.7143 | |
| 170 | D | A | 0.0000 | |
| 171 | Y | A | 0.0000 | |
| 172 | Q | A | 0.0000 | |
| 173 | I | A | 0.0000 | |
| 174 | V | A | 0.0000 | |
| 175 | A | A | 0.0000 | |
| 176 | V | A | 0.0000 | |
| 177 | E | A | -0.0308 | |
| 178 | G | A | 0.0000 | |
| 179 | Y | A | 1.2830 | |
| 180 | F | A | 1.4628 | |
| 181 | S | A | 0.0000 | |
| 182 | S | A | -1.0547 | |
| 183 | G | A | -1.5768 | |
| 184 | S | A | -1.4320 | |
| 185 | A | A | 0.0000 | |
| 186 | D | A | -1.3590 | |
| 187 | I | A | 0.0000 | |
| 188 | T | A | -0.7642 | |
| 189 | V | A | 0.0000 | |
| 190 | S | A | -0.4236 |