Project name: A0A814BCJ6

Status: done

Started: 2025-05-07 02:58:43
Chain sequence(s) A: LFNANCACKNHKCLCQYR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log 
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[WARNING]    PDB-Info: The input structure is likely a peptide. Results may be inaccurate.         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:00:17)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/258ee7c6befc5ad/tmp/folded.pdb                (00:00:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues
Minimal score value
-2.3872
Maximal score value
2.3017
Average score
-0.4648
Total score value
-8.3669
Download the table (csv)

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 L A 2.3017
2 F A 1.9621
3 N A -0.0451
4 A A -0.6632
5 N A -1.2253
6 C A 0.0618
7 A A -0.3485
8 C A -0.7425
9 K A -2.1361
10 N A -2.3872
11 H A -2.2383
12 K A -2.1180
13 C A -0.6766
14 L A 0.5394
15 C A 0.7751
16 Q A -0.1629
17 Y A 0.2952
18 R A -1.5585
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is likely a peptide. Results may be inaccurate. The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.3997 4.5289 View CSV PDB
4.5 -0.3929 4.5289 View CSV PDB
5.0 -0.3728 4.5289 View CSV PDB
5.5 -0.3198 4.5289 View CSV PDB
6.0 -0.2095 4.5289 View CSV PDB
6.5 -0.0432 4.5289 View CSV PDB
7.0 0.1463 4.5289 View CSV PDB
7.5 0.3344 4.5289 View CSV PDB
8.0 0.5174 4.5288 View CSV PDB
8.5 0.697 4.5285 View CSV PDB
9.0 0.8731 4.5276 View CSV PDB