| Chain sequence(s) |
A: MNNDNNTIYGFDVNLICEFFLNTKRQGPGSPDVTLKALSFIDNLSDTAQIADIGCGTGGQTMVLAQNVSGTITGLDFFSGCIDKFNHDALKLNLQNRVKGIVGSMDNLPFEKESLDLIWSEGAIYNIGFERGINEWRNYLKPDGYIAVSESSWFTEERPAEIHDFWMQEYQEIDTIPVKVAQLQKAGYLPVASFVLPEKCWTEHYYQPLIEARKLMLEKYPHNETVKKLIEFQHLEEALYNKYKGFYGYVFYIGKKI
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:02)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:09:19)
[INFO] Main: Simulation completed successfully. (00:09:22)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | M | A | -0.1045 | |
| 2 | N | A | -2.1077 | |
| 3 | N | A | -2.9927 | |
| 4 | D | A | -3.4418 | |
| 5 | N | A | -3.0092 | |
| 6 | N | A | -2.2636 | |
| 7 | T | A | -0.6425 | |
| 8 | I | A | 0.9975 | |
| 9 | Y | A | 1.4836 | |
| 10 | G | A | 0.1916 | |
| 11 | F | A | -0.0338 | |
| 12 | D | A | -0.8767 | |
| 13 | V | A | 0.0000 | |
| 14 | N | A | -1.1960 | |
| 15 | L | A | -0.4858 | |
| 16 | I | A | 0.0006 | |
| 17 | C | A | 0.0000 | |
| 18 | E | A | -0.6105 | |
| 19 | F | A | 0.0000 | |
| 20 | F | A | -0.5753 | |
| 21 | L | A | -0.7999 | |
| 22 | N | A | -1.6651 | |
| 23 | T | A | 0.0000 | |
| 24 | K | A | -2.1966 | |
| 25 | R | A | -1.3728 | |
| 26 | Q | A | -0.9267 | |
| 27 | G | A | -0.5192 | |
| 28 | P | A | 0.0000 | |
| 29 | G | A | 0.0000 | |
| 30 | S | A | 0.0000 | |
| 31 | P | A | -1.0740 | |
| 32 | D | A | -1.9727 | |
| 33 | V | A | 0.0000 | |
| 34 | T | A | 0.0000 | |
| 35 | L | A | -0.7411 | |
| 36 | K | A | -1.3211 | |
| 37 | A | A | 0.0000 | |
| 38 | L | A | -0.4584 | |
| 39 | S | A | -0.4061 | |
| 40 | F | A | 0.0465 | |
| 41 | I | A | 0.0000 | |
| 42 | D | A | -1.7793 | |
| 43 | N | A | -1.4876 | |
| 44 | L | A | -0.9209 | |
| 45 | S | A | -1.3160 | |
| 46 | D | A | -1.9330 | |
| 47 | T | A | -1.1170 | |
| 48 | A | A | 0.0000 | |
| 49 | Q | A | -0.9866 | |
| 50 | I | A | 0.0000 | |
| 51 | A | A | 0.0000 | |
| 52 | D | A | 0.0000 | |
| 53 | I | A | 0.0000 | |
| 54 | G | A | 0.4064 | |
| 55 | C | A | 0.0000 | |
| 56 | G | A | -0.1422 | |
| 57 | T | A | 0.0000 | |
| 58 | G | A | 0.0000 | |
| 59 | G | A | -0.9006 | |
| 60 | Q | A | 0.0000 | |
| 61 | T | A | 0.0000 | |
| 62 | M | A | 0.0000 | |
| 63 | V | A | 0.0000 | |
| 64 | L | A | 0.0000 | |
| 65 | A | A | 0.0000 | |
| 66 | Q | A | -1.6441 | |
| 67 | N | A | -1.6603 | |
| 68 | V | A | -1.0876 | |
| 69 | S | A | -1.3451 | |
| 70 | G | A | 0.0000 | |
| 71 | T | A | -1.2582 | |
| 72 | I | A | 0.0000 | |
| 73 | T | A | -0.5798 | |
| 74 | G | A | 0.0000 | |
| 75 | L | A | 0.0000 | |
| 76 | D | A | 0.0000 | |
| 77 | F | A | 2.5607 | |
| 78 | F | A | 1.1201 | |
| 79 | S | A | 0.3150 | |
| 80 | G | A | -0.6351 | |
| 81 | C | A | 0.0000 | |
| 82 | I | A | 0.0000 | |
| 83 | D | A | -2.3037 | |
| 84 | K | A | -2.2308 | |
| 85 | F | A | 0.0000 | |
| 86 | N | A | -2.0138 | |
| 87 | H | A | -2.2177 | |
| 88 | D | A | -1.8943 | |
| 89 | A | A | 0.0000 | |
| 90 | L | A | -1.1612 | |
| 91 | K | A | -1.7037 | |
| 92 | L | A | -0.7560 | |
| 93 | N | A | -1.6662 | |
| 94 | L | A | -1.8211 | |
| 95 | Q | A | -2.5716 | |
| 96 | N | A | -2.3441 | |
| 97 | R | A | -1.9733 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -2.0044 | |
| 100 | G | A | 0.0000 | |
| 101 | I | A | 0.9034 | |
| 102 | V | A | 2.3208 | |
| 103 | G | A | 1.0076 | |
| 104 | S | A | -0.0661 | |
| 105 | M | A | -1.0985 | |
| 106 | D | A | -3.0294 | |
| 107 | N | A | -2.3711 | |
| 108 | L | A | 0.0000 | |
| 109 | P | A | -1.1615 | |
| 110 | F | A | -1.6612 | |
| 111 | E | A | -3.1247 | |
| 112 | K | A | -3.8072 | |
| 113 | E | A | -3.6888 | |
| 114 | S | A | -2.4079 | |
| 115 | L | A | 0.0000 | |
| 116 | D | A | -1.2632 | |
| 117 | L | A | 0.0000 | |
| 118 | I | A | 0.0000 | |
| 119 | W | A | 0.0000 | |
| 120 | S | A | 0.0000 | |
| 121 | E | A | 0.0000 | |
| 122 | G | A | -0.2029 | |
| 123 | A | A | 0.0000 | |
| 124 | I | A | 0.0000 | |
| 125 | Y | A | -0.5655 | |
| 126 | N | A | -1.2595 | |
| 127 | I | A | -1.4068 | |
| 128 | G | A | 0.0000 | |
| 129 | F | A | 0.0000 | |
| 130 | E | A | -2.7873 | |
| 131 | R | A | -3.3208 | |
| 132 | G | A | 0.0000 | |
| 133 | I | A | 0.0000 | |
| 134 | N | A | -2.8074 | |
| 135 | E | A | -3.2453 | |
| 136 | W | A | 0.0000 | |
| 137 | R | A | -1.8770 | |
| 138 | N | A | -2.8530 | |
| 139 | Y | A | -2.7513 | |
| 140 | L | A | 0.0000 | |
| 141 | K | A | -2.4866 | |
| 142 | P | A | -1.5006 | |
| 143 | D | A | -1.6658 | |
| 144 | G | A | 0.0000 | |
| 145 | Y | A | 0.0000 | |
| 146 | I | A | 0.0000 | |
| 147 | A | A | 0.0000 | |
| 148 | V | A | 0.0000 | |
| 149 | S | A | 0.0000 | |
| 150 | E | A | 0.0000 | |
| 151 | S | A | 0.0000 | |
| 152 | S | A | 0.0000 | |
| 153 | W | A | 0.0000 | |
| 154 | F | A | 0.1283 | |
| 155 | T | A | -1.1225 | |
| 156 | E | A | -2.5983 | |
| 157 | E | A | -2.7517 | |
| 158 | R | A | -1.8436 | |
| 159 | P | A | -1.3421 | |
| 160 | A | A | -1.6617 | |
| 161 | E | A | -2.3418 | |
| 162 | I | A | 0.0000 | |
| 163 | H | A | -2.0167 | |
| 164 | D | A | -2.4294 | |
| 165 | F | A | -1.5970 | |
| 166 | W | A | 0.0000 | |
| 167 | M | A | -1.5910 | |
| 168 | Q | A | -1.9041 | |
| 169 | E | A | -1.1722 | |
| 170 | Y | A | 0.0000 | |
| 171 | Q | A | -1.9521 | |
| 172 | E | A | -1.3669 | |
| 173 | I | A | 0.0000 | |
| 174 | D | A | -0.8422 | |
| 175 | T | A | -0.0877 | |
| 176 | I | A | 0.6102 | |
| 177 | P | A | 0.3957 | |
| 178 | V | A | 0.5472 | |
| 179 | K | A | 0.0000 | |
| 180 | V | A | 0.2418 | |
| 181 | A | A | -0.4780 | |
| 182 | Q | A | -1.4233 | |
| 183 | L | A | 0.0000 | |
| 184 | Q | A | -1.4507 | |
| 185 | K | A | -2.4461 | |
| 186 | A | A | -1.8263 | |
| 187 | G | A | -0.5759 | |
| 188 | Y | A | 0.0000 | |
| 189 | L | A | 0.5706 | |
| 190 | P | A | 0.1326 | |
| 191 | V | A | 0.8484 | |
| 192 | A | A | 0.5882 | |
| 193 | S | A | 0.5650 | |
| 194 | F | A | 0.6457 | |
| 195 | V | A | 1.1457 | |
| 196 | L | A | 0.0000 | |
| 197 | P | A | -1.0021 | |
| 198 | E | A | -2.7190 | |
| 199 | K | A | -2.3815 | |
| 200 | C | A | 0.0000 | |
| 201 | W | A | 0.0000 | |
| 202 | T | A | -2.2694 | |
| 203 | E | A | -2.9432 | |
| 204 | H | A | -2.2923 | |
| 205 | Y | A | 0.0000 | |
| 206 | Y | A | 0.0000 | |
| 207 | Q | A | -1.8999 | |
| 208 | P | A | -1.6675 | |
| 209 | L | A | 0.0000 | |
| 210 | I | A | -0.1973 | |
| 211 | E | A | -1.8126 | |
| 212 | A | A | 0.0000 | |
| 213 | R | A | 0.0000 | |
| 214 | K | A | -1.8880 | |
| 215 | L | A | -1.4229 | |
| 216 | M | A | 0.0000 | |
| 217 | L | A | -1.7057 | |
| 218 | E | A | -2.6449 | |
| 219 | K | A | -2.5375 | |
| 220 | Y | A | -1.8351 | |
| 221 | P | A | -1.9506 | |
| 222 | H | A | -2.1423 | |
| 223 | N | A | -2.2420 | |
| 224 | E | A | -2.9858 | |
| 225 | T | A | -2.1845 | |
| 226 | V | A | 0.0000 | |
| 227 | K | A | -2.7915 | |
| 228 | K | A | -3.1564 | |
| 229 | L | A | 0.0000 | |
| 230 | I | A | 0.0000 | |
| 231 | E | A | -2.4600 | |
| 232 | F | A | -0.8492 | |
| 233 | Q | A | 0.0000 | |
| 234 | H | A | -1.0132 | |
| 235 | L | A | -0.0070 | |
| 236 | E | A | -0.5352 | |
| 237 | E | A | -1.1561 | |
| 238 | A | A | -0.9458 | |
| 239 | L | A | -1.3130 | |
| 240 | Y | A | 0.0000 | |
| 241 | N | A | -2.6773 | |
| 242 | K | A | -2.6569 | |
| 243 | Y | A | 0.0000 | |
| 244 | K | A | -2.3857 | |
| 245 | G | A | -1.3327 | |
| 246 | F | A | -0.6539 | |
| 247 | Y | A | 0.0000 | |
| 248 | G | A | 0.0000 | |
| 249 | Y | A | 0.3337 | |
| 250 | V | A | 0.0000 | |
| 251 | F | A | 0.0000 | |
| 252 | Y | A | 0.0000 | |
| 253 | I | A | 0.0000 | |
| 254 | G | A | 0.0000 | |
| 255 | K | A | -0.2303 | |
| 256 | K | A | 0.0000 | |
| 257 | I | A | 1.2658 |