Chain sequence(s) |
A: MADNKQSFQAGQAAGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:00) [INFO] Main: Simulation completed successfully. (00:00:01) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 0.0130 | |
2 | A | A | -1.4534 | |
3 | D | A | -2.7750 | |
4 | N | A | -2.7769 | |
5 | K | A | -3.0043 | |
6 | Q | A | -3.0705 | |
7 | S | A | -1.9460 | |
8 | F | A | -0.7515 | |
9 | Q | A | -1.9210 | |
10 | A | A | -1.5107 | |
11 | G | A | -1.4430 | |
12 | Q | A | -2.2053 | |
13 | A | A | -1.8923 | |
14 | A | A | -2.1150 | |
15 | G | A | -3.1988 | |
16 | R | A | -4.1581 | |
17 | A | A | -3.2131 | |
18 | E | A | -3.9882 | |
19 | E | A | -3.9298 | |
20 | K | A | -3.1736 | |
21 | G | A | -2.2451 | |
22 | N | A | -2.0793 | |
23 | V | A | -0.1879 | |
24 | L | A | 0.4044 | |
25 | M | A | -0.1297 | |
26 | D | A | -2.0963 | |
27 | K | A | -1.7452 | |
28 | V | A | -0.0580 | |
29 | K | A | -2.1466 | |
30 | D | A | -2.8110 | |
31 | A | A | -1.3330 | |
32 | A | A | -1.1245 | |
33 | T | A | -1.1455 | |
34 | A | A | -0.7629 | |
35 | A | A | -0.7615 | |
36 | G | A | -0.8819 | |
37 | A | A | -0.6491 | |
38 | S | A | -0.8042 | |
39 | A | A | -1.1552 | |
40 | Q | A | -1.7614 | |
41 | T | A | -1.3667 | |
42 | A | A | -1.1689 | |
43 | G | A | -1.3657 | |
44 | Q | A | -2.3891 | |
45 | K | A | -2.2109 | |
46 | I | A | -0.0718 | |
47 | T | A | -0.9716 | |
48 | E | A | -2.1823 | |
49 | A | A | -0.9113 | |
50 | A | A | 0.0440 | |
51 | G | A | -0.5427 | |
52 | G | A | -0.1773 | |
53 | A | A | 0.8080 | |
54 | V | A | 1.0716 | |
55 | N | A | -0.4399 | |
56 | L | A | 0.7387 | |
57 | V | A | 1.1142 | |
58 | K | A | -1.1331 | |
59 | E | A | -2.4521 | |
60 | K | A | -1.9210 | |
61 | T | A | -1.1747 | |
62 | G | A | -1.7525 | |
63 | M | A | -1.1897 | |
64 | N | A | -2.8051 | |
65 | K | A | -2.4049 |