| Chain sequence(s) |
H: EVQLVESGGGVVQPGGSLKLSCVASGTDFSINFIRWYRQAPGKQREFVAGFTATGNTNYADSMKGRFTISRDNTKNAVYLQIDSLKPEDTAVYYCYMLDKWGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VL11H |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.723192 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimization (00:00:03)
[INFO] FoldX: Building mutant model (00:02:06)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:02:15)
[INFO] Main: Simulation completed successfully. (00:02:17)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | E | H | -2.3016 | |
| 2 | V | H | -1.8987 | |
| 3 | Q | H | -1.4196 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 1.3016 | |
| 6 | E | H | 0.2939 | |
| 7 | S | H | -0.5501 | |
| 8 | G | H | -1.1711 | |
| 9 | G | H | -0.8351 | |
| 10 | G | H | 0.1110 | |
| 11 | L | H | 1.0401 | mutated: VL11H |
| 12 | V | H | 0.0206 | |
| 13 | Q | H | -1.2630 | |
| 14 | P | H | -1.4717 | |
| 15 | G | H | -1.3495 | |
| 16 | G | H | -0.8911 | |
| 17 | S | H | -1.2746 | |
| 18 | L | H | -0.9282 | |
| 19 | K | H | -1.9572 | |
| 20 | L | H | 0.0000 | |
| 21 | S | H | -0.1940 | |
| 22 | C | H | 0.0000 | |
| 23 | V | H | 0.2084 | |
| 24 | A | H | 0.0000 | |
| 25 | S | H | -1.2375 | |
| 26 | G | H | -1.7804 | |
| 27 | T | H | -1.3729 | |
| 28 | D | H | -1.5862 | |
| 29 | F | H | 0.0000 | |
| 30 | S | H | -0.0248 | |
| 31 | I | H | 1.8209 | |
| 32 | N | H | 0.0000 | |
| 33 | F | H | 2.4097 | |
| 34 | I | H | 0.0000 | |
| 35 | R | H | -0.1025 | |
| 36 | W | H | 0.0000 | |
| 37 | Y | H | -0.6233 | |
| 38 | R | H | -1.2463 | |
| 39 | Q | H | -2.0204 | |
| 40 | A | H | -1.8612 | |
| 41 | P | H | -1.3537 | |
| 42 | G | H | -1.8477 | |
| 43 | K | H | -3.0999 | |
| 44 | Q | H | -3.0258 | |
| 45 | R | H | -2.6592 | |
| 46 | E | H | -1.9641 | |
| 47 | F | H | -0.7040 | |
| 48 | V | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | G | H | 0.0000 | |
| 51 | F | H | -0.3143 | |
| 52 | T | H | -0.4123 | |
| 53 | A | H | 0.2805 | |
| 54 | T | H | -0.6120 | |
| 55 | G | H | -0.6682 | |
| 56 | N | H | -1.6532 | |
| 57 | T | H | -1.0599 | |
| 58 | N | H | -1.5330 | |
| 59 | Y | H | -1.2433 | |
| 60 | A | H | -1.4254 | |
| 61 | D | H | -2.5159 | |
| 62 | S | H | -1.6452 | |
| 63 | M | H | 0.0000 | |
| 64 | K | H | -2.7072 | |
| 65 | G | H | -1.8543 | |
| 66 | R | H | -1.5504 | |
| 67 | F | H | 0.0000 | |
| 68 | T | H | -0.9860 | |
| 69 | I | H | 0.0000 | |
| 70 | S | H | -0.6337 | |
| 71 | R | H | -1.4636 | |
| 72 | D | H | -2.2380 | |
| 73 | N | H | -2.6128 | |
| 74 | T | H | -1.9107 | |
| 75 | K | H | -2.5162 | |
| 76 | N | H | -2.0758 | |
| 77 | A | H | 0.0000 | |
| 78 | V | H | 0.0000 | |
| 79 | Y | H | -0.5674 | |
| 80 | L | H | 0.0000 | |
| 81 | Q | H | -1.1826 | |
| 82 | I | H | 0.0000 | |
| 83 | D | H | -1.6773 | |
| 84 | S | H | -1.3183 | |
| 85 | L | H | 0.0000 | |
| 86 | K | H | -2.0338 | |
| 87 | P | H | -1.7639 | |
| 88 | E | H | -2.1979 | |
| 89 | D | H | 0.0000 | |
| 90 | T | H | -0.8968 | |
| 91 | A | H | 0.0000 | |
| 92 | V | H | -0.7130 | |
| 93 | Y | H | 0.0000 | |
| 94 | Y | H | -0.3292 | |
| 95 | C | H | 0.0000 | |
| 96 | Y | H | -0.1983 | |
| 97 | M | H | 0.0000 | |
| 98 | L | H | 0.3254 | |
| 99 | D | H | -1.4740 | |
| 100 | K | H | -1.4938 | |
| 101 | W | H | -0.4413 | |
| 102 | G | H | -0.1548 | |
| 103 | Q | H | -1.0395 | |
| 104 | G | H | -0.5455 | |
| 105 | T | H | 0.0000 | |
| 106 | Q | H | -1.2432 | |
| 107 | V | H | 0.0000 | |
| 108 | T | H | -0.3023 | |
| 109 | V | H | 0.0000 | |
| 110 | S | H | -0.8030 | |
| 111 | S | H | -0.8404 |