Project name: TtMqnB N187D dimer

Status: done

Started: 2026-07-14 11:13:15
Chain sequence(s) A: MGSSHHHHHHSSGENLYFQGGTMWLLLSPTRLEAPFLQGEPFAFLAWRGLKGPGFVYLETGIGKVNAAMALAAYAARNPVEKALLFGLAGAYPGGPSLGEAVLVEEEVEADLGLKEGLAPLGFPALALGERRYFNRFPLDPGLTGELARGLGLKVAVGLTRDLVSETPEEALALAQRWGASLENMEGAAFARACLALGVRGAELRAISDPAGVREKAHWRTKEALSALARAVRRLLAEEGGARRPPG
B: MGSSHHHHHHSSGENLYFQGGTMWLLLSPTRLEAPFLQGEPFAFLAWRGLKGPGFVYLETGIGKVNAAMALAAYAARNPVEKALLFGLAGAYPGGPSLGEAVLVEEEVEADLGLKEGLAPLGFPALALGERRYFNRFPLDPGLTGELARGLGLKVAVGLTRDLVSETPEEALALAQRWGASLENMEGAAFARACLALGVRGAELRAISDPAGVREKAHWRTKEALSALARAVRRLLAEEGGARRPPG
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:05:30)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/2d4aac60961b2ea/tmp/folded.pdb                (00:05:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:25)
Show buried residues

Minimal score value
-3.6176
Maximal score value
1.5256
Average score
-0.7676
Total score value
-379.2129

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.7443
2 G A -0.2525
3 S A -0.6919
4 S A -1.2243
5 H A -2.1409
6 H A -2.4908
7 H A -2.7427
8 H A -2.7394
9 H A -2.5177
10 H A -2.1787
11 S A -1.6994
12 S A -1.8475
13 G A -1.8285
14 E A -2.0320
15 N A -1.0295
16 L A 0.9756
17 Y A 1.3889
18 F A 1.0640
19 Q A -0.4876
20 G A -0.8178
21 G A -1.1646
22 T A -0.7797
23 M A -0.3858
24 W A 0.0000
25 L A 0.0000
26 L A 0.0000
27 L A 0.0000
28 S A 0.0000
29 P A 0.0000
30 T A 0.0000
31 R A -1.5808
32 L A 0.3585
33 E A 0.0000
34 A A 0.0000
35 P A -0.4062
36 F A -0.7170
37 L A 0.0000
38 Q A -1.8478
39 G A -2.0699
40 E A -2.5150
41 P A -1.6781
42 F A -0.7510
43 A A -0.1878
44 F A 0.3431
45 L A 0.8474
46 A A 0.2640
47 W A 0.0000
48 R A -1.8362
49 G A 0.0000
50 L A -1.5883
51 K A -1.9271
52 G A -1.4632
53 P A -0.7617
54 G A -0.6484
55 F A 0.0000
56 V A 0.0000
57 Y A 0.0000
58 L A 0.0000
59 E A -1.1762
60 T A 0.0000
61 G A -0.4435
62 I A 0.0000
63 G A 0.0000
64 K A 0.0000
65 V A 0.0000
66 N A 0.0000
67 A A 0.0000
68 A A 0.0000
69 M A 0.0000
70 A A 0.0000
71 L A 0.0000
72 A A 0.0000
73 A A 0.0000
74 Y A -0.5901
75 A A -0.9419
76 A A 0.0000
77 R A -2.5007
78 N A -1.6046
79 P A -1.0621
80 V A -1.2846
81 E A -2.2533
82 K A 0.0000
83 A A 0.0000
84 L A 0.0000
85 L A 0.0000
86 F A 0.0000
87 G A 0.0000
88 L A 0.3833
89 A A 0.0000
90 G A 0.0888
91 A A 0.0000
92 Y A 0.0000
93 P A -0.4038
94 G A -0.5533
95 G A -0.4642
96 P A -0.3953
97 S A -0.2197
98 L A -0.2323
99 G A -1.0583
100 E A -0.8122
101 A A 0.0000
102 V A 0.0000
103 L A 0.0000
104 V A 0.0000
105 E A -1.5438
106 E A -1.1387
107 E A 0.0000
108 V A 0.0000
109 E A 0.0000
110 A A 0.0000
111 D A 0.0000
112 L A 0.0000
113 G A 0.0000
114 L A -1.0426
115 K A -2.4484
116 E A -2.8149
117 G A 0.0000
118 L A 0.0000
119 A A -0.1788
120 P A -0.3882
121 L A 0.6219
122 G A 0.0730
123 F A 0.3142
124 P A -0.2380
125 A A 0.0000
126 L A -0.2785
127 A A -1.1726
128 L A -1.1761
129 G A -1.9234
130 E A -3.1897
131 R A -3.4681
132 R A -2.8076
133 Y A 0.0000
134 F A -0.0174
135 N A 0.0000
136 R A -1.1375
137 F A 0.0000
138 P A -0.9246
139 L A 0.0000
140 D A -1.4032
141 P A -1.5264
142 G A -1.4226
143 L A 0.0000
144 T A 0.0000
145 G A -1.9342
146 E A -2.7937
147 L A 0.0000
148 A A -2.0050
149 R A -3.0236
150 G A -2.3607
151 L A 0.0000
152 G A -1.5404
153 L A -1.0060
154 K A -1.4698
155 V A 0.1701
156 A A -0.0546
157 V A -0.1641
158 G A 0.0000
159 L A 0.0000
160 T A 0.0000
161 R A 0.0481
162 D A 0.0000
163 L A 0.1125
164 V A 0.1772
165 S A 0.0000
166 E A -0.9801
167 T A -0.9095
168 P A -1.0216
169 E A -1.5627
170 E A -0.7818
171 A A 0.0000
172 L A -0.0137
173 A A -0.7699
174 L A -0.7770
175 A A -0.9710
176 Q A -1.7898
177 R A -2.4240
178 W A -1.5607
179 G A -1.2184
180 A A 0.0000
181 S A -0.0959
182 L A 0.0000
183 E A 0.0000
184 N A 0.0000
185 M A 0.2196
186 E A 0.0000
187 G A 0.0000
188 A A 0.0000
189 A A 0.0000
190 F A 0.0000
191 A A 0.0000
192 R A 0.0000
193 A A 0.0000
194 C A 0.0000
195 L A 0.0050
196 A A 0.4862
197 L A 0.0419
198 G A -0.7666
199 V A 0.0000
200 R A -2.3651
201 G A 0.0000
202 A A 0.0000
203 E A 0.0000
204 L A 0.0000
205 R A 0.0000
206 A A 0.0000
207 I A 0.0000
208 S A 0.0000
209 D A -1.0723
210 P A -0.7344
211 A A -0.3858
212 G A 0.0000
213 V A -1.7924
214 R A -3.1294
215 E A -3.5956
216 K A -3.2949
217 A A -2.0054
218 H A -2.1259
219 W A -2.0536
220 R A -2.0833
221 T A -1.8430
222 K A -2.6946
223 E A -2.7050
224 A A 0.0000
225 L A -1.1367
226 S A -1.5101
227 A A -1.3352
228 L A 0.0000
229 A A -1.6653
230 R A -2.7096
231 A A 0.0000
232 V A 0.0000
233 R A -3.2295
234 R A -3.2541
235 L A 0.0000
236 L A 0.0000
237 A A -2.5143
238 E A -3.6052
239 E A -2.4592
240 G A -2.0884
241 G A -2.3469
242 A A -2.4819
243 R A -3.5557
244 R A -3.2718
245 P A -1.9435
246 P A -1.4073
247 G A -0.9863
1 M B 0.7437
2 G B -0.2535
3 S B -0.6916
4 S B -1.2256
5 H B -2.1426
6 H B -2.4893
7 H B -2.7418
8 H B -2.7389
9 H B -2.5154
10 H B -2.1802
11 S B -1.6947
12 S B -1.8397
13 G B -1.8385
14 E B -2.0338
15 N B -0.9891
16 L B 1.0616
17 Y B 1.5256
18 F B 1.3246
19 Q B -0.3975
20 G B -0.7519
21 G B -1.1430
22 T B -0.7825
23 M B -0.3823
24 W B 0.0000
25 L B 0.0000
26 L B 0.0000
27 L B 0.0000
28 S B 0.0000
29 P B 0.0000
30 T B -0.4127
31 R B -1.4287
32 L B 0.6428
33 E B 0.0000
34 A B 0.0000
35 P B -0.3447
36 F B -0.7214
37 L B 0.0000
38 Q B -1.8427
39 G B -2.0352
40 E B -2.4718
41 P B -1.6359
42 F B -0.6624
43 A B -0.0983
44 F B 0.4806
45 L B 1.1349
46 A B 0.4141
47 W B 0.0000
48 R B -1.7622
49 G B 0.0000
50 L B -1.5239
51 K B -1.8218
52 G B -1.4082
53 P B -0.6990
54 G B -0.5906
55 F B 0.0000
56 V B 0.0000
57 Y B 0.0000
58 L B 0.0000
59 E B -1.0740
60 T B 0.0000
61 G B -0.4551
62 I B 0.0000
63 G B 0.0000
64 K B 0.0000
65 V B 0.0000
66 N B 0.0000
67 A B 0.0000
68 A B 0.0000
69 M B 0.0000
70 A B 0.0000
71 L B 0.0000
72 A B 0.0000
73 A B 0.0000
74 Y B -0.5498
75 A B -0.9714
76 A B 0.0000
77 R B -2.4871
78 N B -1.5967
79 P B -1.0628
80 V B -1.2000
81 E B -2.0936
82 K B 0.0000
83 A B 0.0000
84 L B 0.0000
85 L B 0.0000
86 F B 0.0000
87 G B 0.0000
88 L B 0.4032
89 A B 0.0000
90 G B 0.0880
91 A B 0.0000
92 Y B 0.0000
93 P B -0.3933
94 G B -0.5486
95 G B -0.4643
96 P B -0.3832
97 S B -0.2080
98 L B -0.2550
99 G B -1.1090
100 E B -0.8434
101 A B 0.0000
102 V B 0.0000
103 L B 0.0000
104 V B 0.0000
105 E B -1.4606
106 E B -1.0884
107 E B 0.0000
108 V B 0.0000
109 E B 0.0000
110 A B 0.0000
111 D B 0.0000
112 L B 0.0000
113 G B 0.0000
114 L B 0.0000
115 K B -2.1260
116 E B -2.6796
117 G B 0.0000
118 L B 0.0000
119 A B -0.0949
120 P B -0.2902
121 L B 0.6518
122 G B 0.2805
123 F B 0.7901
124 P B -0.0320
125 A B 0.0000
126 L B -0.2366
127 A B -1.1429
128 L B -1.2073
129 G B -1.9359
130 E B -3.1991
131 R B -3.4867
132 R B -2.7665
133 Y B 0.0000
134 F B 0.0619
135 N B 0.0000
136 R B -1.0821
137 F B 0.0000
138 P B -0.8933
139 L B 0.0000
140 D B -1.1827
141 P B -1.4184
142 G B -1.3217
143 L B 0.0000
144 T B 0.0000
145 G B -1.9147
146 E B -2.7921
147 L B 0.0000
148 A B -1.9822
149 R B -3.0239
150 G B -2.3873
151 L B 0.0000
152 G B -1.5336
153 L B -0.9941
154 K B -1.4348
155 V B 0.2450
156 A B -0.0146
157 V B -0.1437
158 G B 0.0000
159 L B 0.0000
160 T B 0.0000
161 R B 0.0000
162 D B 0.0000
163 L B 0.1068
164 V B 0.1599
165 S B 0.0000
166 E B -1.0444
167 T B -0.9188
168 P B -1.0109
169 E B -1.5399
170 E B -0.7629
171 A B 0.0000
172 L B 0.0486
173 A B -0.7087
174 L B -0.7439
175 A B -0.9513
176 Q B -1.7728
177 R B -2.4180
178 W B -1.5696
179 G B -1.2272
180 A B 0.0000
181 S B -0.0925
182 L B 0.0000
183 E B 0.0000
184 N B 0.0000
185 M B 0.2658
186 E B 0.0000
187 G B 0.0000
188 A B 0.0000
189 A B 0.0000
190 F B 0.0000
191 A B 0.0000
192 R B 0.0000
193 A B 0.0000
194 C B 0.0000
195 L B 0.0972
196 A B 0.4199
197 L B 0.0300
198 G B -0.6682
199 V B 0.0000
200 R B -1.7345
201 G B 0.0000
202 A B 0.0000
203 E B 0.0000
204 L B 0.0000
205 R B 0.0000
206 A B 0.0000
207 I B 0.0000
208 S B 0.0000
209 D B -1.0927
210 P B -0.7470
211 A B 0.0000
212 G B 0.0000
213 V B -1.8253
214 R B -3.1554
215 E B -3.6176
216 K B -3.3340
217 A B -2.0542
218 H B -2.2079
219 W B -2.1454
220 R B -2.2144
221 T B -1.9125
222 K B -2.7575
223 E B -2.8083
224 A B 0.0000
225 L B -1.1322
226 S B -1.5386
227 A B -1.3563
228 L B 0.0000
229 A B -1.6986
230 R B -2.7471
231 A B 0.0000
232 V B 0.0000
233 R B -3.2348
234 R B -3.3334
235 L B 0.0000
236 L B -1.8768
237 A B -2.4831
238 E B -3.4040
239 E B -2.5013
240 G B -2.2162
241 G B -2.3690
242 A B -2.5025
243 R B -3.5520
244 R B -3.0918
245 P B -1.9527
246 P B -1.4094
247 G B -0.9854
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.7698 3.6016 View CSV PDB
4.5 -0.8095 3.6016 View CSV PDB
5.0 -0.8604 3.6016 View CSV PDB
5.5 -0.9092 3.6016 View CSV PDB
6.0 -0.9414 3.6016 View CSV PDB
6.5 -0.9495 3.6016 View CSV PDB
7.0 -0.938 3.6015 View CSV PDB
7.5 -0.917 3.6014 View CSV PDB
8.0 -0.8926 3.6011 View CSV PDB
8.5 -0.8671 3.6001 View CSV PDB
9.0 -0.8411 3.5968 View CSV PDB