| Chain sequence(s) |
D: TSSSTKKTQLQLEHLKLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFAQSIISTLT
input PDB |
| Selected Chain(s) | D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | KR18D |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.223833 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with D chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:01:03)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:32)
[INFO] Main: Simulation completed successfully. (00:01:32)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 3 | T | D | -0.7027 | |
| 4 | S | D | -1.0745 | |
| 5 | S | D | -1.4958 | |
| 6 | S | D | -1.4989 | |
| 7 | T | D | -1.4773 | |
| 8 | K | D | -2.4386 | |
| 9 | K | D | -2.5803 | |
| 10 | T | D | -1.7227 | |
| 11 | Q | D | -1.3620 | |
| 12 | L | D | -0.9334 | |
| 13 | Q | D | -1.1824 | |
| 14 | L | D | 0.0000 | |
| 15 | E | D | -1.0656 | |
| 16 | H | D | -0.8443 | |
| 17 | L | D | 0.0000 | |
| 18 | R | D | -0.6020 | mutated: KR18D |
| 19 | L | D | 0.3550 | |
| 20 | D | D | -0.1137 | |
| 21 | L | D | 0.0000 | |
| 22 | Q | D | -0.5835 | |
| 23 | M | D | 0.1154 | |
| 24 | I | D | 0.0000 | |
| 25 | L | D | -0.8321 | |
| 26 | N | D | -1.4249 | |
| 27 | G | D | 0.0000 | |
| 28 | I | D | 0.0000 | |
| 29 | N | D | -1.3603 | |
| 30 | N | D | -1.1232 | |
| 31 | Y | D | 0.0365 | |
| 32 | K | D | -1.5718 | |
| 33 | N | D | 0.0000 | |
| 34 | P | D | -1.1877 | |
| 35 | K | D | -1.5206 | |
| 36 | L | D | -0.9457 | |
| 37 | T | D | -1.0218 | |
| 38 | R | D | -1.7514 | |
| 39 | M | D | 0.0000 | |
| 40 | L | D | -0.3908 | |
| 41 | T | D | -0.4903 | |
| 42 | F | D | -0.4394 | |
| 43 | K | D | -1.2800 | |
| 44 | F | D | 0.0000 | |
| 45 | Y | D | -0.3772 | |
| 46 | M | D | 0.0000 | |
| 47 | P | D | 0.0000 | |
| 48 | K | D | -3.0675 | |
| 49 | K | D | -2.9076 | |
| 50 | A | D | -2.1273 | |
| 51 | T | D | -1.5713 | |
| 52 | E | D | -2.4555 | |
| 53 | L | D | -1.6151 | |
| 54 | K | D | -2.0593 | |
| 55 | H | D | -1.8517 | |
| 56 | L | D | 0.0000 | |
| 57 | Q | D | -0.9491 | |
| 58 | C | D | 0.0000 | |
| 59 | L | D | 0.0000 | |
| 60 | E | D | -1.3725 | |
| 61 | E | D | -2.3010 | |
| 62 | E | D | 0.0000 | |
| 63 | L | D | 0.0000 | |
| 64 | K | D | -2.8098 | |
| 65 | P | D | -1.9514 | |
| 66 | L | D | 0.0000 | |
| 67 | E | D | -2.6642 | |
| 68 | E | D | -2.5961 | |
| 69 | V | D | 0.0000 | |
| 70 | L | D | 0.0000 | |
| 71 | N | D | -1.8196 | |
| 72 | L | D | -0.5367 | |
| 73 | A | D | -0.9464 | |
| 74 | Q | D | -1.3750 | |
| 75 | S | D | -1.8222 | |
| 76 | K | D | -2.3423 | |
| 77 | N | D | -2.0148 | |
| 78 | F | D | -0.7036 | |
| 79 | H | D | -1.8150 | |
| 80 | L | D | -1.7020 | |
| 81 | R | D | -3.0835 | |
| 82 | P | D | 0.0000 | |
| 83 | R | D | -3.5290 | |
| 84 | D | D | -3.3533 | |
| 85 | L | D | 0.0000 | |
| 86 | I | D | 0.0000 | |
| 87 | S | D | -1.2603 | |
| 88 | N | D | -0.9800 | |
| 89 | I | D | 0.0000 | |
| 90 | N | D | -0.0863 | |
| 91 | V | D | 1.3209 | |
| 92 | I | D | 0.2925 | |
| 93 | V | D | 0.0000 | |
| 94 | L | D | 0.2042 | |
| 95 | E | D | -1.1127 | |
| 96 | L | D | 0.0000 | |
| 97 | K | D | -1.6900 | |
| 98 | G | D | -1.5345 | |
| 99 | S | D | -1.6018 | |
| 100 | E | D | -2.1876 | |
| 101 | T | D | -1.0210 | |
| 102 | T | D | -0.5248 | |
| 103 | F | D | -0.0834 | |
| 104 | M | D | 0.7876 | |
| 105 | C | D | -0.7171 | |
| 106 | E | D | -1.5686 | |
| 107 | Y | D | -1.2759 | |
| 108 | A | D | -2.1830 | |
| 109 | D | D | -2.7990 | |
| 110 | E | D | -2.7958 | |
| 111 | T | D | -1.5116 | |
| 112 | A | D | 0.0000 | |
| 113 | T | D | -0.6076 | |
| 114 | I | D | 0.0000 | |
| 115 | V | D | -1.0716 | |
| 116 | E | D | -1.9496 | |
| 117 | F | D | 0.0000 | |
| 118 | L | D | 0.0000 | |
| 119 | N | D | -1.7631 | |
| 120 | R | D | -1.5900 | |
| 121 | W | D | 0.0000 | |
| 122 | I | D | 0.0000 | |
| 123 | T | D | -0.9445 | |
| 124 | F | D | 0.0000 | |
| 125 | A | D | 0.0000 | |
| 126 | Q | D | -1.2562 | |
| 127 | S | D | -0.8391 | |
| 128 | I | D | 0.0000 | |
| 129 | I | D | -0.5045 | |
| 130 | S | D | -0.4060 | |
| 131 | T | D | -0.1682 | |
| 132 | L | D | -0.2491 | |
| 133 | T | D | -0.2588 |