Project name: A0A4W5M7P9-2

Status: done

Started: 2025-05-07 02:58:26
Chain sequence(s) A: ASCHCRFFNSICYCWRL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log 
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[WARNING]    PDB-Info: The input structure is likely a peptide. Results may be inaccurate.         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:00:15)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/3160b05c9eb8fd9/tmp/folded.pdb                (00:00:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:44)
Show buried residues
Minimal score value
-0.3721
Maximal score value
2.2623
Average score
0.9591
Total score value
16.3039
Download the table (csv)

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 A A 0.1017
2 S A 0.1894
3 C A 0.5406
4 H A 0.3933
5 C A 1.1856
6 R A 0.7506
7 F A 2.2623
8 F A 2.1092
9 N A 0.4041
10 S A 1.0560
11 I A 1.5632
12 C A 1.6507
13 Y A 1.1945
14 C A 1.4370
15 W A 0.8899
16 R A -0.3721
17 L A 0.9479
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is likely a peptide. Results may be inaccurate. The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 1.9102 5.1595 View CSV PDB
4.5 1.9124 5.1595 View CSV PDB
5.0 1.919 5.1595 View CSV PDB
5.5 1.9369 5.1595 View CSV PDB
6.0 1.975 5.1595 View CSV PDB
6.5 2.0305 5.1595 View CSV PDB
7.0 2.0818 5.1595 View CSV PDB
7.5 2.1124 5.1595 View CSV PDB
8.0 2.1254 5.1595 View CSV PDB
8.5 2.13 5.1595 View CSV PDB
9.0 2.1314 5.1595 View CSV PDB