Project name: 37f21e1211b5027

Status: done

Started: 2026-04-15 08:32:13
Chain sequence(s) A: MGVFSNLRGPKIGLTHEELPVVANGSTSSSSSPSSFKRKVSTFLPICVALVVIIEIGFLCRLDNASLVDTLTHFFTKSSSDLKVGSGIEKCQEWLERVDSVTYSRDFTKDPIFISGSNKDFKSCSVDCVMGFTSDKKPDAAFGLSHQPGTLSIIRSMESAQYYQENNLAQARRKGYDIVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVKIDSYGGCHRNRDGSVEKVEALKHYKFSLAFENTNEEDYVTEKFFQSLVAGSVPVVVGAPNIEEFAPSPDSFLHIKQMDDVKAVAKKMKYLADNPDAYNQTLRWKHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLYVRERGRFDMESIFLKDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGIYPIGLTQRQALYNFKFEGNSSLSTHIQRNPCPKFEVVFV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:06:47)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/37f21e1211b5027/tmp/folded.pdb                (00:06:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:11)
Show buried residues

Minimal score value
-3.8365
Maximal score value
4.843
Average score
-0.6847
Total score value
-343.0224

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 1.2551
2 G A 1.3870
3 V A 2.6698
4 F A 2.2923
5 S A 0.8166
6 N A -0.5830
7 L A -0.1724
8 R A -1.8019
9 G A -1.5064
10 P A -1.2676
11 K A -1.2643
12 I A 1.2156
13 G A 1.0029
14 L A 1.5070
15 T A -0.1815
16 H A -1.9773
17 E A -3.0047
18 E A -2.3545
19 L A 0.8181
20 P A 1.4554
21 V A 2.9177
22 V A 2.4908
23 A A 0.6088
24 N A -1.1358
25 G A -1.2011
26 S A -0.8209
27 T A -0.4466
28 S A -0.4557
29 S A -0.4971
30 S A -0.5197
31 S A -0.5295
32 S A -0.5757
33 P A -0.5752
34 S A -0.0615
35 S A 0.1608
36 F A 0.3674
37 K A -1.9060
38 R A -2.6490
39 K A -1.9556
40 V A 0.6195
41 S A 0.5918
42 T A 1.6723
43 F A 3.6183
44 L A 3.5479
45 P A 2.6261
46 I A 3.9197
47 C A 4.0081
48 V A 4.4347
49 A A 3.9066
50 L A 4.4479
51 V A 4.7033
52 V A 4.4439
53 I A 4.8430
54 I A 4.3251
55 E A 2.3529
56 I A 3.1764
57 G A 2.5069
58 F A 2.9299
59 L A 2.6198
60 C A 1.1193
61 R A -0.4729
62 L A 0.0766
63 D A -1.8940
64 N A -1.3917
65 A A -0.4110
66 S A -0.1736
67 L A 1.0681
68 V A 1.3018
69 D A -0.4513
70 T A 0.6018
71 L A 1.6526
72 T A 0.8077
73 H A 0.1295
74 F A 1.8633
75 F A 2.0822
76 T A 0.2455
77 K A -1.0360
78 S A -0.7050
79 S A -0.9873
80 S A -1.3729
81 D A -1.7278
82 L A 0.0681
83 K A -0.7980
84 V A 0.9842
85 G A -0.4190
86 S A -0.8183
87 G A -1.4162
88 I A -1.9960
89 E A -3.0465
90 K A -3.0374
91 C A 0.0000
92 Q A -2.7459
93 E A -3.5357
94 W A -2.2310
95 L A 0.0000
96 E A -2.6983
97 R A -2.6828
98 V A -1.2915
99 D A 0.0000
100 S A -0.8874
101 V A -0.5220
102 T A -0.2767
103 Y A -0.2648
104 S A -0.4686
105 R A -1.1252
106 D A -1.8526
107 F A 0.0000
108 T A -1.7831
109 K A -2.4682
110 D A -1.8623
111 P A -1.3334
112 I A 0.0000
113 F A 0.0000
114 I A 0.0000
115 S A 0.1966
116 G A 0.0653
117 S A -0.7791
118 N A -2.0619
119 K A -3.0526
120 D A -3.1838
121 F A -2.1821
122 K A -2.3262
123 S A -1.5654
124 C A -0.9044
125 S A -0.9555
126 V A 0.0000
127 D A -1.8364
128 C A 0.0000
129 V A -0.2344
130 M A 0.0000
131 G A 0.0936
132 F A 1.5435
133 T A 0.0788
134 S A -1.1672
135 D A -2.6808
136 K A -2.7086
137 K A -2.5470
138 P A -1.1992
139 D A -0.7688
140 A A 0.0000
141 A A 0.1476
142 F A 0.6059
143 G A 0.4571
144 L A 0.8757
145 S A -0.1754
146 H A -1.1264
147 Q A -1.4802
148 P A -1.1946
149 G A -1.0583
150 T A 0.0000
151 L A -0.1518
152 S A 0.0000
153 I A 0.0000
154 I A 0.0000
155 R A -0.8758
156 S A -0.6966
157 M A -0.5828
158 E A -1.5515
159 S A 0.0000
160 A A 0.0000
161 Q A -1.7424
162 Y A -0.6091
163 Y A -0.4224
164 Q A -1.6365
165 E A -2.0503
166 N A 0.0000
167 N A -1.4058
168 L A -0.9863
169 A A -1.2914
170 Q A -2.1760
171 A A 0.0000
172 R A -2.5617
173 R A -3.2095
174 K A -2.5419
175 G A -1.7136
176 Y A -1.0419
177 D A -1.0660
178 I A 0.0000
179 V A 0.0000
180 M A 0.0000
181 T A 0.0000
182 T A 0.0000
183 S A -0.6234
184 L A 0.0000
185 S A -0.5303
186 S A 0.0000
187 D A -0.4434
188 V A 0.0000
189 P A 0.0000
190 V A 0.0000
191 G A 0.0309
192 Y A -0.1392
193 F A 0.0000
194 S A -0.9473
195 W A 0.0000
196 A A -1.5738
197 E A -2.2461
198 Y A 0.0000
199 D A -2.1670
200 I A 0.0000
201 M A -0.5802
202 A A -0.6135
203 P A -0.4669
204 V A -0.0726
205 Q A -0.8830
206 P A -0.8414
207 K A -1.2399
208 T A -1.2863
209 E A -1.8384
210 K A -2.3705
211 A A 0.0000
212 L A -1.0410
213 A A 0.0000
214 A A 0.0000
215 A A 0.0000
216 F A -0.4934
217 I A 0.0000
218 S A -0.9865
219 N A -0.8078
220 C A -0.2180
221 A A -0.4098
222 A A -0.9031
223 R A -1.9382
224 N A -1.2653
225 F A -0.8023
226 R A 0.0000
227 L A -0.6519
228 Q A -1.1561
229 A A 0.0000
230 L A 0.0000
231 E A -1.5302
232 A A -1.7073
233 L A 0.0000
234 M A -1.6881
235 K A -2.5396
236 T A -2.3029
237 N A -2.3840
238 V A 0.0000
239 K A -2.2431
240 I A 0.0000
241 D A 0.0000
242 S A 0.0000
243 Y A 0.0000
244 G A -1.9451
245 G A -1.5490
246 C A 0.0000
247 H A -2.1026
248 R A -3.6820
249 N A -3.2455
250 R A -3.1487
251 D A -3.0915
252 G A -2.3577
253 S A -1.2222
254 V A -1.2875
255 E A -2.3371
256 K A -1.8443
257 V A -1.5273
258 E A -2.5811
259 A A -1.6228
260 L A 0.0000
261 K A -1.5443
262 H A -1.5842
263 Y A 0.0000
264 K A -0.9454
265 F A 0.0000
266 S A 0.0000
267 L A 0.0000
268 A A 0.0000
269 F A 0.0000
270 E A 0.0000
271 N A -1.1249
272 T A 0.0000
273 N A -1.9087
274 E A -1.8174
275 E A -2.2299
276 D A 0.0000
277 Y A 0.0000
278 V A 0.0000
279 T A 0.0000
280 E A -0.7266
281 K A -0.5023
282 F A 0.0000
283 F A 0.0000
284 Q A -1.0482
285 S A 0.0000
286 L A 0.0000
287 V A -0.6393
288 A A 0.0000
289 G A 0.0000
290 S A 0.0000
291 V A 0.0000
292 P A 0.0000
293 V A 0.0000
294 V A 0.0000
295 V A 0.0000
296 G A 0.0000
297 A A 0.0000
298 P A -1.7763
299 N A -1.7158
300 I A 0.0000
301 E A -2.3266
302 E A -1.2926
303 F A 0.0000
304 A A 0.0000
305 P A 0.0000
306 S A -1.3406
307 P A -1.5645
308 D A -2.3700
309 S A 0.0000
310 F A -0.6374
311 L A -0.7538
312 H A -0.9646
313 I A 0.0000
314 K A -2.3538
315 Q A -1.7900
316 M A -1.5250
317 D A -2.5332
318 D A -2.1166
319 V A 0.0000
320 K A -2.8904
321 A A -2.0147
322 V A 0.0000
323 A A 0.0000
324 K A -2.6422
325 K A -1.9716
326 M A 0.0000
327 K A -1.5805
328 Y A -0.8757
329 L A 0.0000
330 A A -1.4815
331 D A -2.2354
332 N A -2.0333
333 P A -2.1561
334 D A -2.9319
335 A A -2.2076
336 Y A 0.0000
337 N A -2.8140
338 Q A -2.7509
339 T A 0.0000
340 L A 0.0000
341 R A -3.0873
342 W A 0.0000
343 K A 0.0000
344 H A -2.3150
345 E A -2.7394
346 G A -1.6362
347 P A 0.0000
348 S A -0.6715
349 D A -0.8407
350 S A -0.4593
351 F A 0.0000
352 K A -0.4759
353 A A 0.0000
354 L A 0.0000
355 I A 0.0000
356 D A 0.0000
357 M A 0.0000
358 A A -0.3971
359 A A -0.6012
360 V A 0.0000
361 H A -0.9910
362 S A -0.5889
363 S A 0.0000
364 C A 0.0000
365 R A -0.3990
366 L A 0.0000
367 C A 0.0000
368 I A 0.0000
369 F A -0.0224
370 V A 0.0000
371 A A 0.0000
372 T A 0.0000
373 R A -1.1263
374 I A -0.7233
375 R A -1.4255
376 E A -2.0550
377 Q A -2.3713
378 E A -2.1229
379 E A -2.5908
380 K A -3.2210
381 S A -2.6877
382 P A -2.7789
383 E A -3.4172
384 F A 0.0000
385 K A -3.8365
386 R A -3.4373
387 R A -2.1896
388 P A -1.1885
389 C A 0.0000
390 K A -1.4616
391 C A -1.2111
392 T A -1.6550
393 R A -2.2336
394 G A -1.6565
395 S A -1.5744
396 E A -2.3585
397 T A -2.0369
398 V A 0.0000
399 Y A 0.0000
400 H A 0.0000
401 L A 0.0000
402 Y A -0.1459
403 V A 0.0000
404 R A 0.0000
405 E A 0.0000
406 R A -0.3806
407 G A -0.6831
408 R A -1.1468
409 F A 0.0000
410 D A -1.9920
411 M A -1.0358
412 E A -0.7119
413 S A -0.4545
414 I A 0.0000
415 F A -0.4435
416 L A 0.0000
417 K A -2.1252
418 D A -2.5882
419 G A -2.0513
420 N A -2.3949
421 L A 0.0000
422 T A -1.6845
423 L A -1.4669
424 E A -2.3207
425 A A -1.6718
426 L A 0.0000
427 E A -1.6852
428 S A -1.0229
429 A A -0.5078
430 V A 0.0000
431 L A -0.5209
432 A A 0.0274
433 K A -0.3430
434 F A 0.0000
435 M A -0.4206
436 S A -0.1745
437 L A -0.0893
438 R A -1.5484
439 Y A -0.8026
440 E A -1.5145
441 P A 0.0000
442 I A -0.6847
443 W A 0.0000
444 K A -2.0030
445 K A -2.5137
446 E A -1.7965
447 R A 0.0000
448 P A -1.1067
449 A A -0.8368
450 S A -0.8986
451 L A 0.0000
452 R A -2.3279
453 G A -2.3023
454 D A -2.9349
455 G A -2.9346
456 K A -2.9021
457 L A -1.8309
458 R A -2.0850
459 V A -0.8502
460 H A -0.6699
461 G A -0.4571
462 I A -0.1029
463 Y A 0.0000
464 P A -0.0283
465 I A 0.1186
466 G A -0.4333
467 L A -0.1652
468 T A -0.4079
469 Q A 0.0000
470 R A -0.5898
471 Q A -1.0407
472 A A 0.0000
473 L A -0.3591
474 Y A -0.6125
475 N A -1.3901
476 F A -1.0176
477 K A -2.1652
478 F A 0.0000
479 E A -2.4944
480 G A -1.7858
481 N A -1.7520
482 S A -1.0670
483 S A -1.2912
484 L A 0.0000
485 S A -1.3718
486 T A -1.3350
487 H A -1.4967
488 I A 0.0000
489 Q A -2.5628
490 R A -2.8067
491 N A -2.0203
492 P A -2.0398
493 C A 0.0000
494 P A 0.0000
495 K A -0.2686
496 F A 0.0000
497 E A 0.0000
498 V A 0.0000
499 V A 0.0000
500 F A 0.0000
501 V A -0.9493
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.5967 7.1449 View CSV PDB
4.5 -0.6633 7.0656 View CSV PDB
5.0 -0.7433 6.9514 View CSV PDB
5.5 -0.8215 6.846 View CSV PDB
6.0 -0.8806 6.846 View CSV PDB
6.5 -0.9079 6.846 View CSV PDB
7.0 -0.9038 6.846 View CSV PDB
7.5 -0.8796 6.846 View CSV PDB
8.0 -0.844 6.846 View CSV PDB
8.5 -0.7996 6.846 View CSV PDB
9.0 -0.746 6.846 View CSV PDB